SMTL ID : 4u7a.1

The carboxy-terminal domain of Erb1 is a seven-bladed beta-propeller that binds RNA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: D.465, P.466, S.467, N.517, N.518, G.519, F.537, I.541 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.467, A:S.467, A:N.517, A:N.518, A:G.519 EDO.2: 3 residues within 4Å: Chain A: W.470, V.491, I.536 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.489

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: K.658, G.659, I.660, S.677, Q.678, R.679, Y.680, R.682 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.660, A:S.677, A:Q.678, A:R.679, A:R.679, A:R.682, A:R.682

1 x EOH: ETHANOL(Non-functional Binders)

EOH.4: 3 residues within 4Å: Chain A: H.622, Y.627, L.686 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.686 Hydrogen bonds: A:H.622

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wegrecki, M. et al., The Carboxy-Terminal Domain of Erb1 Is a Seven-Bladed -Propeller that Binds RNA. Plos One (2015)

Release Date

2015-04-29

Peptides

Ribosome biogenesis protein ERB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome biogenesis protein ERB1