SMTL ID : 4u89.1

4'-phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 22 residues within 4Å: Chain A: R.68, F.72, R.76, K.95, K.98, G.99, E.100, P.101, L.111, T.112, H.113, D.134, K.176, E.177, Y.180, K.181, F.184, W.190, L.191, G.192, F.193, A.196 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.180, A:Y.180, A:Y.180, A:W.190 Hydrogen bonds: A:K.98, A:T.112, A:T.112, A:H.113, A:E.177, A:Y.180, A:K.181, A:L.191 Water bridges: A:R.68, A:R.76, A:R.76, A:R.76, A:R.76, A:K.95, A:H.113 Salt bridges: A:R.68, A:R.76, A:K.95, A:H.113, A:K.181, A:K.181

11 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: D.157, M.158, T.161, T.199, F.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.161, A:F.200 NA.3: 4 residues within 4Å: Chain A: H.197, T.199, V.212, R.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.197, A:T.199, A:T.199, A:R.214, A:R.214 NA.4: 4 residues within 4Å: Chain A: P.92, I.93, L.94, C.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.92, A:L.94 NA.5: 3 residues within 4Å: Chain A: L.44, Y.45, S.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.45, A:S.46, A:S.46 NA.6: 3 residues within 4Å: Chain A: C.114, A.115, P.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.115 NA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.8: 4 residues within 4Å: Chain A: P.101, W.103, G.109, P.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.109 Water bridges: A:G.109, A:G.109 NA.9: 2 residues within 4Å: Chain A: P.163 Ligands: PG4.14 No protein-ligand interaction detected (PLIP) NA.10: 1 residues within 4Å: Chain A: R.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.210 NA.11: 1 residues within 4Å: Chain A: E.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37 Water bridges: A:R.124 NA.12: 1 residues within 4Å: Chain A: T.208 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.237, A:E.237

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.13: 2 residues within 4Å: Chain A: S.64, R.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.64 Water bridges: A:S.64, A:R.68, A:R.68 Salt bridges: A:R.68

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.14: 8 residues within 4Å: Chain A: R.160, T.161, M.162, P.163, D.203, S.204, G.206 Ligands: NA.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.159

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.15: 1 residues within 4Å: Chain A: W.190 2 PLIP interactions: 2 interactions with chain A pi-Stacking: A:W.190, A:W.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faille, A. et al., X-ray structure of the 4'-phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis. to be published

Release Date

2015-08-26

Peptides

Phosphopantetheinyl transferase PptT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphopantetheinyl transferase PptT