- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
UDP.2: 17 residues within 4Å:- Chain A: V.98, Y.107, P.108, F.109, Q.110, F.161, M.162, Y.165, N.166, W.170, R.185, V.186, Y.320, R.330, Y.422, Y.456
- Ligands: EDO.8
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:Y.107, A:F.161
- Hydrogen bonds: A:F.109, A:Q.110, A:Q.110, A:N.166, A:N.166, A:R.185, A:Y.320, A:Y.320, A:Y.456, A:Y.456
- Water bridges: A:A.187, A:A.187
- Salt bridges: A:R.330, A:R.330
- pi-Stacking: A:Y.320
UDP.3: 6 residues within 4Å:- Chain A: K.291, L.293, F.294, Y.295, S.380, S.381
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:L.293, A:Y.295, A:Y.295, A:S.381
- Water bridges: A:L.293
- Salt bridges: A:K.291, A:K.291
- pi-Stacking: A:F.294
UDP.11: 17 residues within 4Å:- Chain B: V.98, Y.107, P.108, F.109, Q.110, F.161, M.162, Y.165, N.166, W.170, R.185, V.186, Y.320, R.330, Y.422, Y.456
- Ligands: EDO.20
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:Y.107, B:F.161
- Hydrogen bonds: B:F.109, B:Q.110, B:Q.110, B:N.166, B:N.166, B:R.185, B:Y.320, B:Y.422, B:Y.456
- Water bridges: B:Y.107, B:R.185, B:A.187, B:R.330, B:R.330
- Salt bridges: B:R.330, B:R.330
- pi-Stacking: B:Y.320
UDP.12: 6 residues within 4Å:- Chain B: K.291, L.293, F.294, Y.295, S.380, S.381
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:L.293, B:Y.295, B:Y.295, B:S.381
- Salt bridges: B:K.291
- pi-Stacking: B:F.294
- 13 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: P.310, E.311, R.312, K.405
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.312
- Salt bridges: A:R.312, A:K.405
SO4.5: 2 residues within 4Å:- Chain A: K.73, R.499
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.499
SO4.6: 2 residues within 4Å:- Chain A: N.190, K.192
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.190
- Water bridges: A:N.190, A:A.193
- Salt bridges: A:K.192
SO4.13: 4 residues within 4Å:- Chain B: P.310, E.311, R.312, K.405
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.311, B:R.312
- Salt bridges: B:R.312, B:K.405
SO4.14: 3 residues within 4Å:- Chain B: N.43, D.53, R.416
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.43
- Salt bridges: B:R.416
SO4.15: 1 residues within 4Å:- Chain B: R.499
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.499
SO4.16: 2 residues within 4Å:- Chain B: N.190, K.192
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.190
- Water bridges: B:N.190
- Salt bridges: B:K.192
SO4.22: 4 residues within 4Å:- Chain C: P.310, E.311, R.312, K.405
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:E.311, C:R.312
- Salt bridges: C:R.312, C:K.405
SO4.23: 3 residues within 4Å:- Chain C: V.150, T.155, R.163
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.163
SO4.24: 1 residues within 4Å:- Chain C: R.499
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.499
SO4.25: 3 residues within 4Å:- Chain C: N.43, D.53, R.416
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.43
- Salt bridges: C:R.416
SO4.30: 4 residues within 4Å:- Chain D: P.310, E.311, R.312, K.405
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.311, D:R.312
- Salt bridges: D:R.312, D:K.405
SO4.31: 2 residues within 4Å:- Chain D: P.117, K.118
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.118
- Salt bridges: D:K.118
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 3 residues within 4Å:- Chain A: W.446, N.474
- Chain C: E.497
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:N.474
- Water bridges: C:T.496
EDO.8: 7 residues within 4Å:- Chain A: G.65, V.67, N.210, W.318, R.330
- Ligands: FDA.1, UDP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.330
- Water bridges: A:T.332, A:T.332
EDO.9: 5 residues within 4Å:- Chain A: C.100, Q.101, E.120, L.160, E.323
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.101, A:E.120, A:E.323, A:E.323
EDO.17: 1 residues within 4Å:- Ligands: EDO.18
No protein-ligand interaction detected (PLIP)EDO.18: 1 residues within 4Å:- Ligands: EDO.17
No protein-ligand interaction detected (PLIP)EDO.19: 3 residues within 4Å:- Chain B: W.446, N.474
- Chain D: E.497
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.474, B:N.474
EDO.20: 6 residues within 4Å:- Chain B: G.65, V.67, W.318, R.330
- Ligands: FDA.10, UDP.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.330
- Water bridges: B:T.332
EDO.26: 3 residues within 4Å:- Chain A: E.497
- Chain C: W.446, N.474
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Water bridges: A:T.496
- Hydrogen bonds: C:N.474
EDO.27: 5 residues within 4Å:- Chain C: G.65, V.67, W.318, R.330
- Ligands: FDA.21
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.330
- Water bridges: C:T.332
EDO.28: 4 residues within 4Å:- Chain C: R.306, T.407, D.408, E.409
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.409
EDO.32: 3 residues within 4Å:- Chain B: E.497
- Chain D: W.446, N.474
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain D- Water bridges: B:T.496
- Hydrogen bonds: D:N.474, D:N.474
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Da Fonseca, I. et al., Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics. Biochemistry (2014)
- Release Date
- 2014-12-03
- Peptides
- UDP-galactopyranose mutase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 13 x SO4: SULFATE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Da Fonseca, I. et al., Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics. Biochemistry (2014)
- Release Date
- 2014-12-03
- Peptides
- UDP-galactopyranose mutase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D