SMTL ID : 4uac.1

EUR_01830 with acarbose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- AC1: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-AC1.1: 20 residues within 4Å: Chain A: P.27, E.29, S.63, E.64, S.65, K.68, D.69, A.85, D.87, Q.88, N.135, N.169, W.171, Y.172, E.224, W.245, K.283, W.361, D.362, T.365 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.361 Hydrogen bonds: A:K.68, A:D.69, A:D.87, A:D.87, A:Q.88, A:S.65, A:N.135, A:N.135, A:N.169 Water bridges: A:S.65, A:S.65, A:S.65, A:D.69, A:W.361, A:W.361, A:T.365

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 11 residues within 4Å: Chain A: N.174, A.178, C.182, T.183, I.184, G.186, D.187, G.188, F.197, F.279, V.350 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.174, A:I.184, A:G.186

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: A.116, A.119, T.120, T.189, A.351, Q.352, P.353, I.354 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.119 Water bridges: A:G.188, A:Q.352 EDO.4: 3 residues within 4Å: Chain A: D.168, D.369, Q.372 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.372 EDO.5: 6 residues within 4Å: Chain A: T.23, K.76, A.77, A.78, A.79, D.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.77, A:D.80 Water bridges: A:T.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cockburn, D.W. et al., Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale. Mol.Microbiol. (2015)

Release Date

2014-12-10

Peptides

Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)

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