SMTL ID : 4uai.1

Crystal structure of CXCL12 in complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x 3GG: 1-phenyl-3-[4-(1H-tetrazol-5-yl)phenyl]urea(Non-covalent)

3GG.1: 9 residues within 4Å: Chain A: E.15, H.17, V.18, A.19, N.22, L.42, N.45, R.47, V.49 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.18, A:V.49 Hydrogen bonds: A:E.15, A:E.15, A:A.19, A:N.22, A:N.44, A:N.45, A:R.47

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: A.19, R.20, A.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.21 Salt bridges: A:R.20 SO4.3: 3 residues within 4Å: Chain B: R.41, R.47, Q.48 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.48, B:Q.48 Salt bridges: B:R.41, B:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, E.W. et al., Structural Analysis of a Novel Small Molecule Ligand Bound to the CXCL12 Chemokine. J.Med.Chem. (2014)

Release Date

2014-11-12

Peptides

Stromal cell-derived factor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Stromal cell-derived factor 1

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