SMTL ID : 4ubh.1

Resting state of rat cysteine dioxygenase Y157F variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.86, H.88, H.140 Ligands: CL.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.86, A:H.88, A:H.140

10 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: D.87, H.88, N.134, D.135, G.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.88, A:H.88, A:D.135 NA.3: 8 residues within 4Å: Chain A: F.53, D.54, R.57, Y.58, T.59, C.76, G.78, H.81 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.54, A:T.59, A:T.59, A:G.78 NA.4: 4 residues within 4Å: Chain A: T.11, L.12, A.13, E.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.11, A:L.12, A:A.13 Water bridges: A:E.46 NA.5: 7 residues within 4Å: Chain A: G.100, N.101, N.144, S.146, E.149, P.150, A.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.101, A:N.144, A:S.146, A:P.150 NA.6: 5 residues within 4Å: Chain A: K.103, E.104, T.105, R.141, E.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.105, A:T.105, A:E.143 Water bridges: A:K.103 NA.7: 4 residues within 4Å: Chain A: T.59, R.60, T.180, H.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.60, A:R.60, A:H.182 NA.8: 7 residues within 4Å: Chain A: Y.50, N.61, L.62, S.183, K.184, F.185, G.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.183, A:G.186 NA.9: 6 residues within 4Å: Chain A: K.8, P.9, R.10, A.39, Y.40, E.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.8, A:P.9, A:E.41 NA.10: 4 residues within 4Å: Chain A: R.57, Y.58, H.81, G.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.58, A:G.82, A:G.82 NA.12: 1 residues within 4Å: Chain A: H.165 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 7 residues within 4Å: Chain A: H.86, H.88, C.93, H.140, H.155, F.157 Ligands: FE2.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tchesnokov, E.P. et al., Crystal structure of cysteine dioxygenase mutant. To be published

Release Date

2015-02-11

Peptides

Cysteine dioxygenase type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cysteine dioxygenase type 1