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SMTL ID : 4ubt.3
(2 other biounits)
Structure of the C93S variant of the 3-ketoacyl-CoA thiolase FadA5 from M. tuberculosis in complex with a steroid and CoA.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-dimer
Ligands
2 x
COA
:
COENZYME A
(Non-covalent)
COA.1:
15 residues within 4Å:
Chain A:
L.136
,
Q.159
,
F.160
,
R.229
,
T.231
,
L.239
,
A.250
,
S.253
,
S.254
,
Q.255
,
I.256
,
A.325
,
H.355
,
V.357
Ligands:
CL.4
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:F.160
,
A:I.256
Hydrogen bonds:
A:Q.159
,
A:R.229
,
A:R.229
,
A:T.231
,
A:S.254
,
A:S.254
,
A:S.254
,
A:I.256
Water bridges:
A:R.25
,
A:R.25
,
A:Q.185
,
A:S.254
pi-Cation interactions:
A:R.229
,
A:R.229
COA.6:
13 residues within 4Å:
Chain B:
L.136
,
Q.159
,
F.160
,
R.229
,
T.231
,
L.239
,
A.250
,
S.253
,
S.254
,
I.256
,
F.326
,
V.357
Ligands:
3G6.5
14
PLIP interactions
:
14 interactions with chain B
Hydrophobic interactions:
B:I.256
Hydrogen bonds:
B:Q.159
,
B:R.229
,
B:R.229
,
B:T.231
,
B:S.254
,
B:S.254
,
B:S.254
,
B:I.256
Water bridges:
B:R.25
,
B:R.25
,
B:Q.185
pi-Cation interactions:
B:R.229
,
B:R.229
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
4 residues within 4Å:
Chain A:
E.161
,
E.164
,
R.165
,
K.168
No protein-ligand interaction detected (PLIP)
GOL.7:
4 residues within 4Å:
Chain B:
W.192
,
D.198
,
I.201
,
F.223
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:F.223
,
B:R.224
3 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.3:
1 residues within 4Å:
Chain A:
S.202
Ligand excluded by PLIP
CL.4:
5 residues within 4Å:
Chain A:
Q.100
,
S.101
,
A.386
,
G.387
Ligands:
COA.1
Ligand excluded by PLIP
CL.9:
2 residues within 4Å:
Chain B:
Q.189
,
A.193
Ligand excluded by PLIP
1 x
3G6
:
(2S)-2-[(8S,9S,10R,13S,14S,17R)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]propanoic acid (non-preferred name)
(Non-covalent)
3G6.5:
12 residues within 4Å:
Chain A:
N.76
Chain B:
V.68
,
Q.100
,
S.101
,
L.136
,
R.144
,
I.147
,
N.158
,
Q.159
,
A.386
,
G.387
Ligands:
COA.6
7
PLIP interactions
:
7 interactions with chain B
Hydrophobic interactions:
B:V.68
,
B:L.136
,
B:N.158
,
B:Q.159
Hydrogen bonds:
B:S.101
,
B:S.101
,
B:G.387
1 x
PEG
:
DI(HYDROXYETHYL)ETHER
(Non-functional Binders)
PEG.8:
6 residues within 4Å:
Chain B:
L.331
,
A.334
,
R.335
,
E.338
,
P.339
,
M.341
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:R.335
,
B:R.335
1 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.10:
2 residues within 4Å:
Chain B:
D.318
,
S.378
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:D.318
,
B:S.378
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Schaefer, C.M. et al., FadA5 a Thiolase from Mycobacterium tuberculosis: A Steroid-Binding Pocket Reveals the Potential for Drug Development against Tuberculosis. Structure (2015)
Release Date
2014-12-17
Peptides
Acetyl-CoA acetyltransferase FadA5:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
B
C
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2° Structure
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Acetyl-CoA acetyltransferase FadA5
Related Entries With Identical Sequence
4ubt.1
|
4ubt.2
|
4ubu.1
|
4ubu.2
|
4ubu.3
|
4ubu.4
|
4ubu.5
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
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Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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