SMTL ID : 4uc8.1 (1 other biounit)

N-terminal globular domain of the RSV Nucleoprotein in complex with C- terminal phenylalanine of the Phosphoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PHE: PHENYLALANINE(Non-covalent)

PHE.1: 7 residues within 4Å: Chain A: E.101, S.104, R.105, Y.108, R.123, H.124 Ligands: SO4.2 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:R.105, A:Y.108 Water bridges: A:E.117, F.1, F.1 Salt bridges: A:R.123, A:H.124 pi-Stacking: A:Y.108, A:H.124

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: M.82, R.105 Ligands: PHE.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions Salt bridges: A:R.105 Hydrogen bonds: F.1, F.1 SO4.3: 3 residues within 4Å: Chain A: T.72, H.73, R.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.74, A:R.74 Salt bridges: A:H.73 SO4.4: 6 residues within 4Å: Chain A: R.49, I.53, R.57, V.63, K.64, A.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:A.65 Salt bridges: A:R.57 SO4.5: 2 residues within 4Å: Chain A: A.154, R.157 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.154, A:A.154 Salt bridges: A:R.157 SO4.6: 2 residues within 4Å: Chain A: S.210, R.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.211 Water bridges: A:R.211, A:V.212 SO4.7: 2 residues within 4Å: Chain A: K.109, K.113 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.113 Salt bridges: A:K.109, A:K.113

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 2 residues within 4Å: Chain A: T.93, T.94 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.92, A:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouizougun-Oubari, M. et al., A Druggable Pocket at the Nucleocapsid/Phosphoprotein Interaction Site of the Human Respiratory Syncytial Virus. J.Virol. (2015)

Release Date

2015-08-19

Peptides

NUCLEOPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NUCLEOPROTEIN

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