SMTL ID : 4ud0.1

X-ray structure and activities of an essential Mononegavirales L- protein domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: Q.60, H.61, R.64, T.72, K.75, G.243, E.250, K.393 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.60, A:G.243 Salt bridges: A:H.61, A:R.64, A:K.75, A:K.393 SO4.4: 8 residues within 4Å: Chain B: Q.60, H.61, R.64, T.72, K.75, G.243, E.250, K.393 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.60, B:G.243 Salt bridges: B:H.61, B:R.64, B:K.75, B:K.393

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.168, H.200, C.204, C.207 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.168, A:H.200, A:C.204, A:C.207 ZN.5: 4 residues within 4Å: Chain B: H.168, H.200, C.204, C.207 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.168, B:H.200, B:C.204, B:C.207

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 21 residues within 4Å: Chain A: S.70, T.72, G.73, G.98, E.99, G.100, A.101, G.102, N.103, W.104, S.121, L.122, D.127, H.128, T.156, D.157, A.158, D.181, A.182, E.183, F.184 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.70, A:T.72, A:T.72, A:G.73, A:G.102, A:N.103, A:W.104, A:L.122, A:D.127, A:D.127, A:D.157, A:D.157, A:A.158, A:D.181, A:E.183 SAH.6: 21 residues within 4Å: Chain B: S.70, T.72, G.73, G.98, E.99, G.100, A.101, G.102, N.103, W.104, S.121, L.122, D.127, H.128, T.156, D.157, A.158, D.181, A.182, E.183, F.184 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.70, B:T.72, B:T.72, B:G.73, B:G.102, B:N.103, B:W.104, B:L.122, B:D.127, B:D.157, B:A.158, B:D.181, B:D.181, B:E.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paesen, G.C. et al., X-Ray Structure and Activities of an Essential Mononegavirales L-Protein Domain. Nat.Commun. (2015)

Release Date

2015-11-18

Peptides

RNA-DIRECTED RNA POLYMERASE L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

RNA-DIRECTED RNA POLYMERASE L