- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 27 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: Y.262, V.301, F.303, D.324
- Ligands: PO4.1
Ligand excluded by PLIPGOL.3: 7 residues within 4Å:- Chain A: D.40, V.41, P.283, Y.284, L.285, F.340
- Chain B: T.83
Ligand excluded by PLIPGOL.4: 6 residues within 4Å:- Chain A: Y.121, G.144, P.145, F.168, N.192
- Chain C: F.223
Ligand excluded by PLIPGOL.6: 8 residues within 4Å:- Chain A: Y.284, A.287, R.289
- Chain B: R.53, D.54, S.59, N.60, T.83
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain B: Y.262, V.301, F.303, D.324
- Ligands: PO4.15
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain B: D.40, V.41, P.283, Y.284, F.340
- Chain C: T.83
Ligand excluded by PLIPGOL.18: 5 residues within 4Å:- Chain B: Y.135, Y.151, L.161, D.207, M.208
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain A: F.223
- Chain B: Y.121, G.144, P.145, F.168, N.192
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain B: R.88, L.107, K.108, W.119
Ligand excluded by PLIPGOL.22: 8 residues within 4Å:- Chain B: Y.284, A.287, R.289
- Chain C: R.53, D.54, S.59, N.60, T.83
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain C: Y.262, V.301, F.303, D.324
- Ligands: PO4.26
Ligand excluded by PLIPGOL.28: 7 residues within 4Å:- Chain A: T.83
- Chain C: D.40, V.41, P.283, Y.284, L.285, F.340
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain C: Y.135, F.183, D.207, M.208
- Ligands: EDO.36
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain B: F.223
- Chain C: Y.121, G.144, P.145, F.168, N.192
Ligand excluded by PLIPGOL.32: 4 residues within 4Å:- Chain C: R.88, L.107, K.108, W.119
Ligand excluded by PLIPGOL.33: 9 residues within 4Å:- Chain A: R.53, D.54, S.59, N.60, T.83
- Chain C: Y.284, A.287, R.289
- Ligands: EDO.34
Ligand excluded by PLIPGOL.42: 4 residues within 4Å:- Chain D: Y.262, F.303, D.324
- Ligands: PO4.41
Ligand excluded by PLIPGOL.43: 7 residues within 4Å:- Chain D: D.40, V.41, L.42, Y.284, L.285, F.340
- Chain E: T.83
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain D: R.133, Y.135, Y.151, D.207, M.208
Ligand excluded by PLIPGOL.45: 6 residues within 4Å:- Chain D: Y.121, G.144, P.145, F.168, N.192
- Chain F: F.223
Ligand excluded by PLIPGOL.49: 5 residues within 4Å:- Chain E: Y.262, V.301, F.303, D.324
- Ligands: PO4.48
Ligand excluded by PLIPGOL.50: 6 residues within 4Å:- Chain D: F.223
- Chain E: Y.121, G.144, P.145, F.168, N.192
Ligand excluded by PLIPGOL.56: 5 residues within 4Å:- Chain F: Y.262, V.301, F.303, D.324
- Ligands: PO4.55
Ligand excluded by PLIPGOL.57: 8 residues within 4Å:- Chain D: T.83
- Chain F: D.40, V.41, P.283, Y.284, L.285, F.340
- Ligands: GOL.61
Ligand excluded by PLIPGOL.58: 6 residues within 4Å:- Chain E: F.223
- Chain F: Y.121, G.144, P.145, F.168, N.192
Ligand excluded by PLIPGOL.60: 4 residues within 4Å:- Chain F: R.88, L.107, K.108, W.119
Ligand excluded by PLIPGOL.61: 9 residues within 4Å:- Chain D: R.53, D.54, S.59, N.60, T.83
- Chain F: Y.284, A.287, R.289
- Ligands: GOL.57
Ligand excluded by PLIP- 6 x K: POTASSIUM ION(Non-covalent)
K.5: 3 residues within 4Å:- Chain A: H.216, V.217, W.275
6 PLIP interactions:3 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.216, A:V.217, A:W.275, H2O.5, H2O.6, H2O.8
K.20: 3 residues within 4Å:- Chain B: H.216, V.217, W.275
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.216, B:V.217, B:W.275, H2O.13, H2O.15
K.31: 3 residues within 4Å:- Chain C: H.216, V.217, W.275
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.216, C:V.217, C:W.275, H2O.22, H2O.23
K.46: 3 residues within 4Å:- Chain D: H.216, V.217, W.275
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.216, D:V.217, D:W.275, H2O.29, H2O.30
K.51: 3 residues within 4Å:- Chain E: H.216, V.217, W.275
5 PLIP interactions:3 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:H.216, E:V.217, E:W.275, H2O.35, H2O.36
K.59: 3 residues within 4Å:- Chain F: H.216, V.217, W.275
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:H.216, F:V.217, F:W.275, H2O.40, H2O.40
- 21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 8 residues within 4Å:- Chain A: N.60, S.61, F.63, R.79, D.81, R.85, D.297, D.324
Ligand excluded by PLIPEDO.8: 3 residues within 4Å:- Chain A: E.131, R.177, K.178
Ligand excluded by PLIPEDO.10: 3 residues within 4Å:- Chain A: P.291, M.295
- Chain C: R.289
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain A: S.84, R.86
- Chain C: V.225, G.282, P.283, I.346
Ligand excluded by PLIPEDO.12: 3 residues within 4Å:- Chain A: D.54, L.56, P.57
Ligand excluded by PLIPEDO.13: 4 residues within 4Å:- Chain A: D.113, Q.160, E.162
- Chain E: R.213
Ligand excluded by PLIPEDO.14: 1 residues within 4Å:- Chain A: Y.135
Ligand excluded by PLIPEDO.23: 3 residues within 4Å:- Chain B: E.131, R.177, K.178
Ligand excluded by PLIPEDO.25: 6 residues within 4Å:- Chain A: V.225, G.282, P.283, I.346
- Chain B: S.84, R.86
Ligand excluded by PLIPEDO.34: 9 residues within 4Å:- Chain A: R.53, N.60, R.85, D.297
- Chain C: Y.284, A.287, P.288, R.289
- Ligands: GOL.33
Ligand excluded by PLIPEDO.35: 3 residues within 4Å:- Chain C: E.131, R.177, K.178
Ligand excluded by PLIPEDO.36: 4 residues within 4Å:- Chain C: E.131, K.178, F.183
- Ligands: GOL.29
Ligand excluded by PLIPEDO.38: 1 residues within 4Å:- Chain C: R.86
Ligand excluded by PLIPEDO.39: 5 residues within 4Å:- Chain C: T.242, P.243, N.311, G.314, I.334
Ligand excluded by PLIPEDO.40: 2 residues within 4Å:- Chain B: R.289
- Chain C: R.53
Ligand excluded by PLIPEDO.47: 5 residues within 4Å:- Chain D: F.129, I.130, E.131, P.176, R.177
Ligand excluded by PLIPEDO.52: 2 residues within 4Å:- Chain E: Y.135, M.208
Ligand excluded by PLIPEDO.53: 3 residues within 4Å:- Chain E: L.107, K.108, W.119
Ligand excluded by PLIPEDO.54: 5 residues within 4Å:- Chain A: R.213
- Chain E: C.111, Q.160, L.161, E.162
Ligand excluded by PLIPEDO.62: 8 residues within 4Å:- Chain F: N.60, S.61, F.63, R.79, D.81, R.85, D.297, D.324
Ligand excluded by PLIPEDO.63: 6 residues within 4Å:- Chain C: R.213
- Chain F: C.111, D.112, D.113, Q.160, E.162
Ligand excluded by PLIP- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.9: 5 residues within 4Å:- Chain A: V.68, P.69, C.128, F.129, I.238
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.129
- Water bridges: A:A.307, A:A.307
PGE.24: 5 residues within 4Å:- Chain B: V.68, P.69, C.128, F.129, Y.134
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.129
- Water bridges: B:Y.134
PGE.37: 4 residues within 4Å:- Chain C: V.68, P.69, C.128, F.129
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ladeveze, S. et al., Structural Bases for N-Glycan Processing by Mannoside Phosphorylase. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-05-27
- Peptides
- UHGB_MP: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 27 x GOL: GLYCEROL(Non-functional Binders)
- 6 x K: POTASSIUM ION(Non-covalent)
- 21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ladeveze, S. et al., Structural Bases for N-Glycan Processing by Mannoside Phosphorylase. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-05-27
- Peptides
- UHGB_MP: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F