SMTL ID : 4uej.1

Closed state of galactitol-1-phosphate 5-dehydrogenase from E. coli in complex with glycerol.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.89, F.90, C.92, C.95, C.103 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.89, A:C.92, A:C.95, A:C.103 ZN.2: 6 residues within 4Å: Chain A: C.38, S.40, H.59, E.60, E.144 Ligands: GOL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.38, A:H.59, H2O.3 ZN.3: 2 residues within 4Å: Chain A: H.267 Chain B: H.267 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.267, B:H.267, H2O.11 ZN.5: 5 residues within 4Å: Chain B: C.89, F.90, C.92, C.95, C.103 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.89, B:C.92, B:C.95, B:C.103 ZN.6: 6 residues within 4Å: Chain B: C.38, S.40, H.59, E.60, E.144 Ligands: GOL.7 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.38, B:H.59, H2O.14

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: C.38, S.40, H.59, E.144, V.148, N.289 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.40 Water bridges: A:V.259, A:M.288, A:N.289 GOL.7: 8 residues within 4Å: Chain B: C.38, S.40, H.59, E.144, V.148, V.259, N.289 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.40, B:V.259 Water bridges: B:M.288, B:N.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benavente, R. et al., Enantioselective Oxidation of Galactitol 1-Phosphate by Galactitol-1-Phosphate 5-Dehydrogenase from Escherichia Coli. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-07-15

Peptides

GALACTITOL-1-PHOSPHATE 5-DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GALACTITOL-1-PHOSPHATE 5-DEHYDROGENASE

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