SMTL ID : 4uh3.1

Structure of rat neuronal nitric oxide synthase heme domain in complex with N1-(3-(2-(6-Amino-4-methylpyridin-2-yl)ethyl)-5- fluorophenyl)-N1,N2-dimethylethane-1,2-diamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: W.113, A.116, R.118, C.119, V.120, G.121, M.274, F.288, S.289, W.291, M.293, E.296, W.382, F.408, Y.410 Ligands: H4B.2, S85.3, ACT.4 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:W.113, A:W.113, A:A.116, A:R.118, A:V.120, A:F.288, A:F.288, A:W.291, A:W.291, A:E.296, A:F.408, A:F.408, A:F.408 Hydrogen bonds: A:Y.410 Water bridges: A:R.300, A:R.300 Salt bridges: A:R.118 pi-Stacking: A:W.113 Metal complexes: A:C.119 HEM.5: 15 residues within 4Å: Chain B: W.113, A.116, R.118, C.119, V.120, G.121, F.288, S.289, W.291, E.296, W.382, F.408, Y.410 Ligands: H4B.6, S85.7 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:W.113, B:W.113, B:A.116, B:R.118, B:V.120, B:F.288, B:F.288, B:F.288, B:W.291, B:E.296, B:W.382, B:F.408, B:F.408 Water bridges: B:E.296, B:R.300 Salt bridges: B:R.118 pi-Stacking: B:W.113 Metal complexes: B:C.119

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 11 residues within 4Å: Chain A: S.38, R.300, V.381, W.382 Chain B: W.380, F.395, H.396, Q.397, E.398 Ligands: HEM.1, S85.3 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.300, A:V.381, A:W.382 Water bridges: A:R.300, A:R.300 pi-Stacking: A:W.382, A:W.382 pi-Cation interactions: A:W.382 Hydrophobic interactions: B:E.398 H4B.6: 11 residues within 4Å: Chain A: W.380, F.395, H.396, Q.397, E.398 Chain B: S.38, M.40, R.300, V.381, W.382 Ligands: HEM.5 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.300, B:R.300, B:V.381, B:W.382 pi-Stacking: B:W.382, B:W.382 pi-Cation interactions: B:W.382 Hydrophobic interactions: A:E.398

2 x S85: N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL)-5-FLUOROPHENYL)-N1,N2-DIMETHYLETHANE-1,2-DIAMINE(Non-covalent)

S85.3: 14 residues within 4Å: Chain A: P.269, V.271, N.273, M.274, F.288, S.289, G.290, W.291, Y.292, E.296, W.382, Y.410 Ligands: HEM.1, H4B.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.269, A:V.271, A:F.288 Hydrogen bonds: A:E.296 S85.7: 14 residues within 4Å: Chain B: P.269, V.271, N.273, M.274, F.288, S.289, G.290, W.291, Y.292, M.293, E.296, W.382, Y.410 Ligands: HEM.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:P.269, B:V.271, B:F.288 Hydrogen bonds: B:M.293, B:E.296, B:Y.410

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: G.121, W.291, V.353, S.361 Ligands: HEM.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.291 Hydrogen bonds: A:W.291 ACT.8: 4 residues within 4Å: Chain B: G.121, Q.124, W.291, V.353 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Q.124 Hydrogen bonds: B:S.361, B:S.361 Water bridges: B:Q.124

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 6 residues within 4Å: Chain A: C.30, C.35, M.36, G.37 Chain B: C.30, C.35 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.30, B:C.35, A:C.30, A:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, S. et al., 2-Aminopyridines with a Truncated Side Chain to Improve Human Neuronal Nitric Oxide Synthase Inhibitory Potency and Selectivity. J.Med.Chem. (2015)

Release Date

2015-07-15

Peptides

NITRIC OXIDE SYNTHASE, BRAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NITRIC OXIDE SYNTHASE, BRAIN

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