- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.33 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x EOH: ETHANOL(Non-functional Binders)
EOH.3: 2 residues within 4Å:- Chain A: P.195
- Chain B: D.198
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.198
- Water bridges: B:D.198, B:D.198, B:D.198
- Hydrophobic interactions: A:P.195
EOH.4: 4 residues within 4Å:- Chain A: K.259, G.260, F.297
- Ligands: CL.12
2 PLIP interactions:2 interactions with chain A- Water bridges: A:P.258, A:L.262
EOH.15: 2 residues within 4Å:- Chain A: D.198
- Chain B: P.195
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:D.198, A:D.198, A:D.198
- Hydrophobic interactions: B:P.195
EOH.16: 4 residues within 4Å:- Chain B: K.259, G.260, F.297
- Ligands: CL.24
2 PLIP interactions:2 interactions with chain B- Water bridges: B:P.258, B:L.262
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: Y.154, W.155, D.273, L.275, D.302, E.325
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.273, A:D.273
- Water bridges: A:D.273, A:D.273, A:I.274, A:S.323
GOL.6: 3 residues within 4Å:- Chain A: N.369, Q.372, E.376
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.369, A:N.369
GOL.7: 6 residues within 4Å:- Chain A: L.229, R.264, E.267, I.268, A.271, N.272
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.264, A:R.264, A:N.272, A:N.272
GOL.17: 6 residues within 4Å:- Chain B: Y.154, W.155, D.273, L.275, D.302, E.325
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.273, B:E.325
- Water bridges: B:Y.154, B:D.273, B:D.273, B:I.274, B:S.323
GOL.18: 3 residues within 4Å:- Chain B: N.369, Q.372, E.376
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.369, B:N.369
GOL.19: 6 residues within 4Å:- Chain B: L.229, R.264, E.267, I.268, A.271, N.272
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.264, B:R.264, B:N.272, B:N.272
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 7 residues within 4Å:- Chain A: R.152, R.156, A.161, T.164
- Chain B: M.192, F.193, G.194
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Water bridges: B:G.194
- Hydrogen bonds: A:R.156
EDO.9: 8 residues within 4Å:- Chain A: I.100, D.104
- Chain B: S.88, R.89, I.92, A.93, N.312, A.314
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.89, B:A.93, B:N.312, B:N.312
EDO.20: 7 residues within 4Å:- Chain A: M.192, F.193, G.194
- Chain B: R.152, R.156, A.161, T.164
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.156
- Water bridges: A:G.194
EDO.21: 8 residues within 4Å:- Chain A: S.88, R.89, I.92, A.93, N.312, A.314
- Chain B: I.100, D.104
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:D.104, A:R.89, A:A.93, A:N.312, A:N.312
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PLP.10: 14 residues within 4Å:- Chain A: S.139, G.140, S.141, Y.173, H.174, G.175, E.246, S.251, D.279, V.281, I.282, K.308
- Chain B: Y.346, T.347
14 PLIP interactions:4 interactions with chain B, 10 interactions with chain A- Hydrogen bonds: B:T.347, B:T.347, B:T.347, A:S.139, A:G.140, A:S.141, A:S.251, A:S.251, A:K.308
- Water bridges: B:Y.348
- Hydrophobic interactions: A:E.246, A:V.281
- Salt bridges: A:K.308
- pi-Stacking: A:Y.173
PLP.22: 14 residues within 4Å:- Chain A: Y.346, T.347
- Chain B: S.139, G.140, S.141, Y.173, H.174, G.175, E.246, S.251, D.279, V.281, I.282, K.308
16 PLIP interactions:12 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:E.246, B:V.281
- Hydrogen bonds: B:S.139, B:G.140, B:S.141, B:S.251, B:S.251, B:K.308, A:T.347, A:T.347, A:T.347
- Water bridges: B:Y.173, B:Y.173, A:Y.348
- Salt bridges: B:K.308
- pi-Stacking: B:Y.173
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 4 residues within 4Å:- Chain A: Y.173, I.186, N.189, S.251
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain A: P.257, P.258, Y.261, L.262
- Ligands: EOH.4
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain B: Y.173, I.186, N.189, S.251
Ligand excluded by PLIPCL.24: 5 residues within 4Å:- Chain B: P.257, P.258, Y.261, L.262
- Ligands: EOH.16
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wilding, M. et al., A Beta-Alanine Catabolism Pathway Containing a Highly Promiscuous Omega-Transaminase in the 12-Aminododecanate-Degrading Pseudomonas Sp. Strain Aac. Appl.Environ.Microbiol. (2016)
- Release Date
- 2016-04-13
- Peptides
- OMEGA AMINO ACID-PYRUVATE AMINOTRANSFERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.33 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x EOH: ETHANOL(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wilding, M. et al., A Beta-Alanine Catabolism Pathway Containing a Highly Promiscuous Omega-Transaminase in the 12-Aminododecanate-Degrading Pseudomonas Sp. Strain Aac. Appl.Environ.Microbiol. (2016)
- Release Date
- 2016-04-13
- Peptides
- OMEGA AMINO ACID-PYRUVATE AMINOTRANSFERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A