SMTL ID : 4uhu.1

W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase class A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Chain A: R.256, L.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.256, A:R.256 FMT.2: 1 residues within 4Å: Chain A: T.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.70 FMT.3: 5 residues within 4Å: Chain A: P.200, D.203, P.225, F.262, H.263 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.203

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: H.263, H.264, H.265 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.265 Water bridges: A:H.264 Salt bridges: A:H.264, A:H.265 ACT.5: 7 residues within 4Å: Chain A: S.44, S.104, R.194, K.208, T.209, G.210, T.211 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.104, A:T.209, A:T.211, A:T.211 Salt bridges: A:R.194, A:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Risso, V.A. et al., De novo active sites for resurrected Precambrian enzymes. Nat Commun (2017)

Release Date

2016-04-13

Peptides

GNCA LACTAMASE W229D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GNCA LACTAMASE W229D

Related Entries With Identical Sequence