SMTL ID : 4uhx.1

Human aldehyde oxidase in complex with phthalazine and thioridazine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 8 residues within 4Å: Chain A: Q.113, C.114, G.115, C.117, C.149, R.150, C.151, M.753 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.114, A:C.117, A:C.149, A:C.151 FES.2: 11 residues within 4Å: Chain A: K.41, G.43, C.44, G.45, G.47, G.48, C.49, G.50, C.52, N.72, C.74 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.49, A:C.52, A:C.74 FES.11: 8 residues within 4Å: Chain B: Q.113, C.114, G.115, C.117, C.149, R.150, C.151, M.753 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.114, B:C.117, B:C.149, B:C.151 FES.12: 11 residues within 4Å: Chain B: K.41, G.43, C.44, G.45, G.47, G.48, C.49, G.50, C.52, N.72, C.74 3 PLIP interactions: 3 interactions with chain B, Metal complexes: B:C.49, B:C.52, B:C.74

2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)

MTE.3: 19 residues within 4Å: Chain A: Q.113, C.151, G.805, A.806, F.807, R.921, M.1047, G.1048, Q.1049, G.1087, G.1088, S.1089, V.1090, V.1091, A.1092, Q.1203, L.1268, E.1270 Ligands: MOS.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.113, A:A.806, A:F.807, A:M.1047, A:Q.1049, A:V.1091, A:A.1092, A:Q.1203, A:Q.1203 MTE.13: 19 residues within 4Å: Chain B: Q.113, C.151, G.805, A.806, F.807, R.921, M.1047, G.1048, Q.1049, G.1087, G.1088, S.1089, V.1090, V.1091, A.1092, Q.1203, L.1268, E.1270 Ligands: MOS.14 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.113, B:A.806, B:F.807, B:M.1047, B:Q.1049, B:V.1091, B:A.1092, B:Q.1203, B:Q.1203

2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)

MOS.4: 9 residues within 4Å: Chain A: Q.776, F.807, G.808, F.920, R.921, G.1087, G.1088, E.1270 Ligands: MTE.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.776, A:G.1088 MOS.14: 9 residues within 4Å: Chain B: Q.776, F.807, G.808, F.920, R.921, G.1087, G.1088, E.1270 Ligands: MTE.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.776, B:G.1088

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 30 residues within 4Å: Chain A: G.46, G.47, G.48, P.263, V.264, I.265, M.266, G.267, N.268, T.269, S.270, V.271, A.308, L.344, A.345, I.349, A.353, S.354, G.357, H.358, I.360, H.363, D.365, S.366, D.367, I.410, L.411, R.429, A.437, L.438 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.345, A:I.349, A:I.349 Hydrogen bonds: A:V.264, A:M.266, A:G.267, A:N.268, A:T.269, A:S.270, A:V.271, A:A.345, A:S.354, A:H.358, A:D.367, A:D.367, A:L.411, A:L.411, A:R.429 FAD.15: 30 residues within 4Å: Chain B: G.46, G.47, G.48, P.263, V.264, I.265, M.266, G.267, N.268, T.269, S.270, V.271, A.308, L.344, A.345, I.349, A.353, S.354, G.357, H.358, I.360, H.363, D.365, S.366, D.367, I.410, L.411, R.429, A.437, L.438 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:A.345, B:I.349, B:I.349 Hydrogen bonds: B:V.264, B:M.266, B:G.267, B:N.268, B:T.269, B:T.269, B:S.270, B:V.271, B:A.345, B:S.354, B:H.358, B:D.367, B:D.367, B:D.367, B:L.411, B:L.411, B:R.429

2 x 4FT: phthalazine(Non-covalent)

4FT.6: 3 residues within 4Å: Chain A: L.812, A.919, F.923 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.812 4FT.16: 3 residues within 4Å: Chain B: L.812, A.919, F.923 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.812

2 x LZU: 10-{2-[(2S)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine(Non-covalent)

LZU.7: 12 residues within 4Å: Chain A: H.575, E.577, D.578, S.1060, R.1061, R.1064, M.1065, P.1066, G.1120, W.1122, W.1125 Ligands: RTZ.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.577, A:W.1125 LZU.17: 12 residues within 4Å: Chain B: H.575, E.577, D.578, S.1060, R.1061, R.1064, M.1065, P.1066, G.1120, W.1122, W.1125 Ligands: RTZ.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.577, B:W.1125

2 x RTZ: 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine(Non-covalent)

RTZ.8: 11 residues within 4Å: Chain A: H.575, E.577, D.578, S.1060, R.1061, R.1064, M.1065, P.1066, G.1120, W.1122 Ligands: LZU.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.577 RTZ.18: 11 residues within 4Å: Chain B: H.575, E.577, D.578, S.1060, R.1061, R.1064, M.1065, P.1066, G.1120, W.1122 Ligands: LZU.17 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.577

4 x MLI: MALONATE ION(Non-functional Binders)

MLI.9: 8 residues within 4Å: Chain A: R.32, K.33, T.38, D.601, M.603, P.604, L.605, R.833 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.38 Hydrogen bonds: A:R.32 Salt bridges: A:R.32, A:K.33, A:R.833, A:R.833 MLI.10: 7 residues within 4Å: Chain A: C.44, L.148, R.433, F.751, Y.1236, K.1237, I.1238 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.148 Hydrogen bonds: A:I.1238 Salt bridges: A:R.433, A:K.1237, A:K.1237 MLI.19: 8 residues within 4Å: Chain B: R.32, K.33, T.38, D.601, M.603, P.604, L.605, R.833 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.38 Hydrogen bonds: B:R.32 Salt bridges: B:R.32, B:K.33, B:R.833, B:R.833 MLI.20: 7 residues within 4Å: Chain B: C.44, L.148, R.433, F.751, Y.1236, K.1237, I.1238 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.148 Hydrogen bonds: B:I.1238 Salt bridges: B:R.433, B:K.1237, B:K.1237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coelho, C. et al., Structural Insights Into Xenobiotic and Inhibitor Binding to Human Aldehyde Oxidase. Nat.Chem.Biol. (2015)

Release Date

2015-09-02

Peptides

ALDEHYDE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ALDEHYDE OXIDASE

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