SMTL ID : 4un3.1

Crystal structure of Cas9 bound to PAM-containing DNA target

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: U.52, G.64 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: A.67, U.68 Chain B: T.1106 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.1106, H2O.6 MG.3: 2 residues within 4Å: Chain A: G.23 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: MG.3 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: D.14, E.766, D.990 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.14, B:D.14 MG.6: 4 residues within 4Å: Chain B: L.627, T.628, F.630, Y.660 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.627, B:T.628, B:Y.660, H2O.11 MG.7: 3 residues within 4Å: Chain A: A.70 Chain B: Q.1354, S.1355 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:Q.1354, H2O.6, H2O.13, H2O.15 MG.8: 3 residues within 4Å: Chain B: E.588, R.590, N.592 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.588, B:R.590, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anders, C. et al., Structural Basis of Pam-Dependent Target DNA Recognition by the Cas9 Endonuclease. Nature (2014)

Release Date

2014-07-23

Peptides

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1