SMTL ID : 4un9.1 (2 other biounits)

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8H INCUBATION IN 5MM MN (STATE 3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: G.20, E.117, N.129 Chain B: G.15 Chain C: C.15 Ligands: MN.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.20, A:E.117, H2O.1, H2O.1 MN.2: 5 residues within 4Å: Chain A: D.21, A.116 Chain B: A.14 Chain C: C.16 Ligands: MN.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.21, A:A.116, H2O.1, H2O.1 MN.3: 10 residues within 4Å: Chain A: G.20, D.21, A.116, E.117 Chain B: A.14, G.15 Chain C: C.15, C.16 Ligands: MN.1, MN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.21, A:E.117 MN.4: 2 residues within 4Å: Chain A: H.156 Chain B: C.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Molina, R. et al., Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-01-14

Peptides

HOMING ENDONUCLEASE I-DMOI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

HOMING ENDONUCLEASE I-DMOI

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