SMTL ID : 4unb.1 (2 other biounits)

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.21, A.116 Chain B: A.14 Chain E: C.1 Ligands: MN.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:A.116, H2O.1 MN.2: 7 residues within 4Å: Chain A: G.20, E.117, N.129 Chain C: A.14, C.15 Chain D: G.1 Ligands: MN.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.20, A:E.117, H2O.1 MN.3: 9 residues within 4Å: Chain A: G.20, D.21, E.117 Chain B: A.14 Chain C: C.15 Chain D: G.1 Chain E: C.1 Ligands: MN.1, MN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.21, A:E.117 MN.4: 1 residues within 4Å: Chain A: N.64 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Molina, R. et al., Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol. (2015)

Release Date

2014-12-17

Peptides

HOMING ENDONUCLEASE I-DMOI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

HOMING ENDONUCLEASE I-DMOI

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