SMTL ID : 4unt.1

Induced monomer of the Mcg variable domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.97, D.98 Chain G: Y.52, P.58, S.59 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:D.98, G:S.59 SO4.2: 6 residues within 4Å: Chain A: N.34, Y.35, V.36, S.37, Y.52, E.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.37, A:E.53 SO4.3: 2 residues within 4Å: Chain A: S.70, G.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.71 SO4.4: 5 residues within 4Å: Chain C: S.97, D.98 Chain F: Y.52, P.58, S.59 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:D.98, C:D.98, F:S.59 SO4.5: 6 residues within 4Å: Chain C: N.34, Y.35, V.36, S.37, Y.52, E.53 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.36, C:E.53 SO4.6: 4 residues within 4Å: Chain C: P.58, S.59 Chain G: S.97, D.98 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain C Hydrogen bonds: G:S.97, G:D.98, C:S.59 SO4.7: 2 residues within 4Å: Chain C: S.70, G.71 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.71 SO4.8: 5 residues within 4Å: Chain D: Y.35, V.36, S.37, Y.52, E.53 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.36, D:E.53 SO4.9: 5 residues within 4Å: Chain B: Y.52, P.58, S.59 Chain E: S.97, D.98 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:D.98, B:S.59 SO4.10: 4 residues within 4Å: Chain E: P.62, R.64, Q.82, E.84 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Q.82, E:E.84 Salt bridges: E:R.64 SO4.11: 5 residues within 4Å: Chain A: P.58, S.59 Chain F: G.96, S.97, D.98 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:D.98, F:D.98, A:S.59, A:S.59 SO4.12: 5 residues within 4Å: Chain D: Y.52, P.58, S.59 Chain H: S.97, D.98 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain H Hydrogen bonds: D:S.59, H:D.98, H:D.98 SO4.13: 6 residues within 4Å: Chain A: K.107 Chain H: Q.41, H.42, A.43, E.86, A.87 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain H Salt bridges: A:K.107, H:H.42 Hydrogen bonds: H:A.43, H:E.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Formation of Amyloid Fibers by Monomeric Light-Chain Variable Domains. J.Biol.Chem. (2014)

Release Date

2014-08-27

Peptides

IG LAMBDA CHAIN V-II REGION MGC: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

IG LAMBDA CHAIN V-II REGION MGC