SMTL ID : 4up5.1

Crystal structure of the Pygo2 PHD finger in complex with the B9L HD1 domain and a chemical fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.5, C.8, H.30, C.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:H.30, A:C.33 ZN.2: 4 residues within 4Å: Chain A: C.21, C.25, C.54, C.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.25, A:C.54, A:C.57

1 x 94W: 6-methoxy-1,3-benzothiazol-2-amine(Non-covalent)

94W.3: 9 residues within 4Å: Chain A: A.7, F.29, C.33, T.34, W.52, C.54, D.55, L.56, T.76 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.7, A:F.29, A:D.55, A:L.56 Hydrogen bonds: A:T.34, A:D.55 Water bridges: A:T.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, T.C.R. et al., Competitive Binding of a Benzimidazole to the Histone-Binding Pocket of the Pygo Phd Finger. Acs Chem.Biol. (2014)

Release Date

2014-11-05

Peptides

PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN

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