SMTL ID : 4uqg.1

A new bio-isosteric base pair based on reversible bonding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 9 residues within 4Å: Chain A: E.28, Y.30, D.75, R.78, L.98, D.111, I.308, N.310, T.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.136, A:R.78, A:D.111, A:N.310, A:N.310, A:A.312, A:R.78 Water bridges: A:Y.30, A:Q.311

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.380 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.380 SO4.3: 1 residues within 4Å: Chain A: R.482 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.482 SO4.4: 3 residues within 4Å: Chain A: H.385, R.405, K.409 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.359 Salt bridges: A:R.405, A:K.409 SO4.5: 5 residues within 4Å: Chain A: E.24, V.25, R.78, D.128, Y.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.24 Water bridges: A:E.24, A:V.25 Salt bridges: A:R.78, A:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomas-Gamasa, M. et al., Post-it" type connected DNA created with a reversible covalent cross-link. Angew. Chem. Int. Ed. Engl. (2015)

Release Date

2014-12-03

Peptides

DNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA POLYMERASE