SMTL ID : 4uqj.1

Cryo-EM density map of GluA2em in complex with ZK200775

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 10.40 Å

Oligo State

homo-tetramer

Ligands

4 x ZK1: {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid(Non-covalent)

ZK1.1: 14 residues within 4Å: Chain A: E.402, Y.405, Y.450, P.478, L.479, T.480, R.485, G.653, S.654, T.686, E.705, T.707, M.708, Y.732 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.450, A:Y.450, A:Y.732 Hydrogen bonds: A:P.478, A:T.480, A:R.485, A:R.485, A:S.654, A:S.654, A:S.654, A:T.686 pi-Stacking: A:Y.450 Halogen bonds: A:E.402, A:T.707 ZK1.2: 13 residues within 4Å: Chain B: E.402, Y.405, Y.450, P.478, L.479, T.480, R.485, G.653, S.654, T.686, T.707, M.708, Y.732 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.450, B:Y.450, B:P.478, B:Y.732 Hydrogen bonds: B:P.478, B:T.480, B:R.485, B:R.485, B:S.654, B:S.654 pi-Stacking: B:Y.450 Halogen bonds: B:T.707 ZK1.3: 13 residues within 4Å: Chain C: E.402, Y.405, Y.450, P.478, L.479, T.480, R.485, G.653, S.654, T.686, T.707, M.708, Y.732 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:P.478, C:Y.732 Hydrogen bonds: C:P.478, C:T.480, C:R.485, C:R.485, C:S.654, C:S.654, C:S.654, C:T.686 pi-Stacking: C:Y.450, C:Y.450 Halogen bonds: C:T.707 ZK1.4: 14 residues within 4Å: Chain D: E.402, Y.405, Y.450, P.478, L.479, T.480, R.485, G.653, S.654, T.686, E.705, T.707, M.708, Y.732 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:Y.450, D:Y.450, D:Y.732 Hydrogen bonds: D:P.478, D:T.480, D:R.485, D:R.485, D:S.654, D:S.654, D:S.654, D:S.654 pi-Stacking: D:Y.450 Halogen bonds: D:E.402, D:T.707

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyerson, J.R. et al., Structural Mechanism of Glutamate Receptor Activation and Desensitization. Nature (2014)

Release Date

2014-08-13

Peptides

GLUTAMATE RECEPTOR 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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GLUTAMATE RECEPTOR 2