SMTL ID : 4ura.2 (1 other biounit)

Crystal structure of human JMJD2A in complex with compound 14a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.228, P.229, G.230, S.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.230, A:S.231

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.189, E.191, H.277 Ligands: LEL.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.189, A:E.191, A:H.277, H2O.3

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.235, H.241, C.307, S.308, C.309 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.235, A:H.241, A:C.307, A:C.309

1 x LEL: 2-(2H-1,2,3-triazol-4-yl)pyridine-4-carboxylic acid(Non-covalent)

LEL.4: 11 residues within 4Å: Chain A: Y.133, Y.178, F.186, H.189, E.191, N.199, K.207, W.209, K.242, H.277 Ligands: NI.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.186, A:W.209 Hydrogen bonds: A:E.191, A:N.199 Water bridges: A:S.197, A:N.291 Salt bridges: A:K.207 pi-Stacking: A:F.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

England, K.S. et al., Optimisation of a triazolopyridine based histone demethylase inhibitor yields a potent and selective KDM2A (FBXL11) inhibitor. Medchemcomm (2014)

Release Date

2015-06-17

Peptides

LYSINE-SPECIFIC DEMETHYLASE 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LYSINE-SPECIFIC DEMETHYLASE 4A

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