SMTL ID : 4usl.1

The X-ray structure of calcium bound human sorcin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.113, D.115, S.117, T.119, E.124 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.113, A:D.115, A:S.117, A:E.124, H2O.3 CA.2: 4 residues within 4Å: Chain A: A.43, D.46, Q.48, E.53 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.43, A:D.46, A:Q.48, H2O.1, H2O.1 CA.3: 5 residues within 4Å: Chain A: D.83, D.85, S.87, T.89, E.94 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.83, A:D.85, A:S.87, A:E.94, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: S.172, R.175, R.176, C.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.172 Water bridges: A:S.197 Salt bridges: A:R.175, A:R.176

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 7 residues within 4Å: Chain A: A.26, Q.48, D.85, G.91, F.92, N.93, E.94 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.48, A:G.91, A:F.92, A:N.93, A:N.93, A:E.94, A:E.94 Water bridges: A:Q.48 PEG.6: 7 residues within 4Å: Chain A: Y.38, V.42, E.53, R.56, C.57, Q.60, S.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.53, A:C.57, A:Q.60 Water bridges: A:Y.38, A:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ilari, A. et al., Structural Basis of Sorcin-Mediated Calcium-Dependent Signal Transduction. Sci.Rep. (2015)

Release Date

2015-07-29

Peptides

SORCIN: A
SORCIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

SORCIN

SORCIN

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