SMTL ID : 4uu5.1

CRYSTAL STRUCTURE OF THE PDZ DOMAIN OF PALS1 IN COMPLEX WITH THE CRB PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

hetero-1-1-mer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: P.2, L.3, G.4 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.70 Chain B: M.13, R.15 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.18 Ligands: CL.6 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: G.6, E.7 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: A.17, R.18 Ligands: CL.4, PUN.9 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: K.10 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: F.73 Chain B: R.15, L.16 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 3 residues within 4Å: Chain A: D.19, S.77, D.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.77, A:D.78

1 x PUN: 2,2,4,4,6,6,8-heptamethylnonane(Non-covalent)

PUN.9: 3 residues within 4Å: Chain A: R.18, H.80 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ivanova, M.E. et al., Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove. Acta Crystallogr. D Biol. Crystallogr. (2015)

Release Date

2015-01-14

Peptides

MAGUK P55 SUBFAMILY MEMBER 5: A
PROTEIN CRUMBS HOMOLOG 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MAGUK P55 SUBFAMILY MEMBER 5

PROTEIN CRUMBS HOMOLOG 1

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