SMTL ID : 4uun.1

Trichomonas vaginalis lactate dehydrogenase in complex with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 25 residues within 4Å: Chain A: T.10, G.11, A.13, G.14, Q.15, I.16, G.17, L.40, D.41, I.42, A.45, R.48, V.86, A.87, S.88, I.107, I.128, G.129, N.130, D.132, L.154, L.157, H.186, S.240, P.244 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.157 Hydrogen bonds: A:G.11, A:Q.15, A:Q.15, A:I.16, A:R.48, A:S.88, A:S.88, A:N.130, A:L.154 Water bridges: A:G.14, A:H.186, A:H.186 NAI.2: 26 residues within 4Å: Chain B: T.10, G.11, A.13, G.14, Q.15, I.16, G.17, L.40, D.41, I.42, A.45, R.48, V.86, A.87, S.88, I.107, I.128, G.129, N.130, D.132, L.154, L.157, H.186, T.239, S.240, P.244 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:L.157, B:P.244 Hydrogen bonds: B:G.11, B:A.13, B:Q.15, B:Q.15, B:I.16, B:R.48, B:S.88, B:N.130, B:N.130, B:L.154, B:T.239 Water bridges: B:G.14, B:G.17, B:S.88, B:S.88, B:N.130, B:H.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steindel, P.A. et al., Gradual Neofunctionalization in the Convergent Evolution of Trichomonad Lactate and Malate Dehydrogenases. Protein Sci. (2016)

Release Date

2015-08-12

Peptides

L-LACTATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-LACTATE DEHYDROGENASE

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