SMTL ID : 4uuy.1

Structural Identification of the Vps18 beta-propeller reveals a critical role in the HOPS complex stability and function.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: D.29, L.44, Q.45, T.322, W.324, E.333 Chain B: Q.45 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.45, B:Q.45 SO4.2: 3 residues within 4Å: Chain A: R.127, K.138, W.140 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.127, A:K.138 SO4.3: 4 residues within 4Å: Chain A: K.25, H.68, V.69, W.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.67, A:V.69, A:V.69 Salt bridges: A:K.25 SO4.6: 4 residues within 4Å: Chain B: K.25, H.68, V.69, W.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.68, B:V.69 Salt bridges: B:K.25 SO4.7: 3 residues within 4Å: Chain B: R.127, K.138, W.140 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.127, B:K.138 SO4.8: 6 residues within 4Å: Chain A: Q.45 Chain B: D.29, Q.45, T.322, W.324, E.333 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.45, B:E.333 Water bridges: B:T.322

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: T.19, T.35, Q.36, R.37, T.38, Y.40 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.35, A:Q.36, A:R.37, A:T.38, A:Y.40, A:Y.40 EDO.5: 2 residues within 4Å: Chain A: L.139, E.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.142 EDO.11: 6 residues within 4Å: Chain B: T.19, T.35, Q.36, R.37, T.38, Y.40 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.35, B:Q.36, B:R.37, B:T.38, B:Y.40

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 5 residues within 4Å: Chain B: N.66, H.68, L.104, S.105, S.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.66, B:L.104 GOL.10: 6 residues within 4Å: Chain B: N.205, L.207, D.220, K.222, F.269, L.347 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.205, B:K.222, B:K.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Behrmann, H. et al., Structural Identification of the Vps18 Beta-Propeller Reveals a Critical Role in the Hops Complex Stability and Function. J.Biol.Chem. (2014)

Release Date

2014-10-29

Peptides

VACUOLAR MEMBRANE PROTEIN PEP3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VACUOLAR MEMBRANE PROTEIN PEP3