SMTL ID : 4uv7.1

The complex structure of extracellular domain of EGFR and GC1118A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: F.321, D.323, S.324, L.325, S.326, N.328, N.331, V.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.323, A:D.323

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: E.388, N.389, N.420, T.422, N.444 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: N.504, V.505, V.526 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: D.290, K.336, N.337 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.336 Hydrogen bonds: A:D.290, A:N.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, Y. et al., Gc1118, an Anti-Egfr Antibody with a Distinct Binding Epitope and Superior Inhibitory Activity Against High-Affinity Egfr Ligands. Mol.Cancer Ther. (2016)

Release Date

2015-10-14

Peptides

EPIDERMAL GROWTH FACTOR RECEPTOR: A
GC1118A: B
GC1118A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

EPIDERMAL GROWTH FACTOR RECEPTOR

GC1118A

GC1118A