SMTL ID : 4uvb.1

LSD1(KDM1A)-CoREST in complex with 1-Methyl-Tranylcypromine (1S,2R)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x D51: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,7aS)-1-amino-1,10,11-trimethyl-4,6-dioxo-3-phenyl-2,3,5,6,7,7a-hexahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate(Non-covalent)

D51.1: 39 residues within 4Å: Chain A: I.304, G.305, G.307, V.308, S.309, L.327, E.328, A.329, R.330, G.334, G.335, R.336, V.337, L.349, G.350, A.351, M.352, V.353, A.559, T.608, A.609, V.610, T.644, L.645, P.646, V.649, V.657, L.679, K.681, W.771, W.776, S.780, Y.781, G.820, E.821, A.829, T.830, V.831, A.834 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:M.352, A:Y.781, A:Y.781, A:Y.781, A:T.830 Hydrogen bonds: A:G.307, A:S.309, A:S.309, A:S.309, A:A.329, A:R.330, A:R.330, A:R.336, A:A.351, A:M.352, A:V.353, A:V.353, A:V.610, A:V.610, A:Y.781, A:Y.781, A:E.821, A:A.829, A:A.829, A:V.831 Salt bridges: A:R.336, A:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vianello, P. et al., Synthesis, Biological Activity and Mechanistic Insights of 1-Substituted Cyclopropylamine Derivatives: A Novel Class of Irreversible Inhibitors of Histone Demethylase Kdm1A. Eur.J.Med.Chem. (2014)

Release Date

2014-09-10

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A

REST COREPRESSOR 1

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