SMTL ID : 4uvc.1

LSD1(KDM1A)-CoREST in complex with 1-Phenyl-Tranylcypromine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x D52: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-[(1S)-1-azanyl-1,3-diphenyl-propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-4aH-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Non-covalent)

D52.1: 38 residues within 4Å: Chain A: G.305, G.307, V.308, S.309, L.327, E.328, A.329, R.330, G.334, G.335, R.336, V.337, L.349, G.350, A.351, M.352, V.353, F.558, A.559, T.608, A.609, V.610, T.644, L.645, P.646, V.657, L.679, K.681, W.771, W.776, S.780, Y.781, G.820, E.821, A.829, T.830, V.831, A.834 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.353, A:F.558, A:Y.781 Hydrogen bonds: A:S.306, A:G.307, A:S.309, A:S.309, A:S.309, A:A.329, A:R.330, A:R.330, A:R.336, A:M.352, A:V.353, A:V.353, A:V.610, A:V.610, A:Y.781, A:E.821, A:V.831 Salt bridges: A:R.336, A:R.336 pi-Cation interactions: A:K.681

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vianello, P. et al., Synthesis, Biological Activity and Mechanistic Insights of 1-Substituted Cyclopropylamine Derivatives: A Novel Class of Irreversible Inhibitors of Histone Demethylase Kdm1A. Eur.J.Med.Chem. (2014)

Release Date

2014-09-10

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A

REST COREPRESSOR 1

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