SMTL ID : 4uw0.1

Low resolution structure of WbdD with C-terminal bundle ordered to residue 505

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.87 Å

Oligo State

homo-trimer

Ligands

3 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: Y.16, Q.17, R.36, G.61, C.62, A.63, F.67, D.82, F.83, Q.84, G.108, R.109, I.110, E.111, L.128, S.129, V.130, I.134 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.17, A:G.61, A:F.83, A:Q.84, A:I.110, A:E.111, A:L.128 Salt bridges: A:R.36 pi-Stacking: A:F.83, A:F.83 SAM.2: 18 residues within 4Å: Chain B: Y.16, Q.17, R.36, G.61, C.62, A.63, F.67, D.82, F.83, Q.84, G.108, R.109, I.110, E.111, L.128, S.129, V.130, I.134 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Q.17, B:G.61, B:F.83, B:Q.84, B:I.110, B:E.111, B:L.128 Salt bridges: B:R.36 pi-Stacking: B:F.83, B:F.83 SAM.3: 18 residues within 4Å: Chain C: Y.16, Q.17, R.36, G.61, C.62, A.63, F.67, D.82, F.83, Q.84, G.108, R.109, I.110, E.111, L.128, S.129, V.130, I.134 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Q.17, C:G.61, C:F.83, C:Q.84, C:I.110, C:E.111, C:L.128 Salt bridges: C:R.36 pi-Stacking: C:F.83, C:F.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagelueken, G. et al., A Coiled-Coil Domain Acts as a Molecular Ruler to Regulate O-Antigen Chain Length in Lipopolysaccharide. Nat.Struct.Mol.Biol. (2015)

Release Date

2014-08-27

Peptides

WBDD: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

WBDD