SMTL ID : 4uwg.1

Discovery of (2S)-8-((3R)-3-Methylmorpholin-4-yl)-1-(3-methyl-2-oxo- butyl)-2-(trifluoromethyl)-3,4-dihydro-2H-pyrimido(1,2-a)pyrimidin-6- one: a Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.476, K.478 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.476 Salt bridges: A:K.478 SO4.2: 3 residues within 4Å: Chain A: R.107, R.204, K.207 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.107, A:R.204, A:K.207 SO4.3: 4 residues within 4Å: Chain A: L.115, Y.214, Y.218, Q.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.218, A:Y.218 Water bridges: A:Q.371

1 x RBQ: (8S)-2-(morpholin-4-yl)-9-[2-(propan-2-yloxy)ethyl]-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one(Non-covalent)

RBQ.4: 15 residues within 4Å: Chain A: F.334, S.336, P.340, I.356, K.358, Y.392, M.404, Q.405, F.406, I.407, S.409, P.411, L.472, I.482, D.483 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.406, A:L.472, A:I.482 Hydrogen bonds: A:K.358, A:I.407, A:D.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pasquier, B. et al., Discovery of (2S)-8-[(3R)-3-Methylmorpholin-4-Yl]-1-(3-Methyl-2-Oxobutyl)-2-(Trifluoromethyl)-3,4-Dihydro-2H-Pyrimido[1,2-A]Pyrimidin-6-One: A Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors. J.Med.Chem. (2015)

Release Date

2014-11-26

Peptides

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3

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