SMTL ID : 4uwi.1

Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a pyrazole sulphonamide ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x XMQ: 2,6-dichloro-4-[3-(4-methylpiperazin-1-yl)propyl]-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide(Non-covalent)

XMQ.1: 19 residues within 4Å: Chain A: V.63, E.64, D.65, F.70, R.71, F.72, N.128, T.164, G.166, Y.178, H.180, F.193, S.293, Y.308, G.370, Q.371, L.372, L.407 Ligands: MYA.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.65, A:F.70, A:F.72, A:Y.178, A:F.193 Hydrogen bonds: A:S.293 Water bridges: A:N.128, A:N.349, A:D.369 Halogen bonds: A:Y.308

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 30 residues within 4Å: Chain A: H.61, Y.62, V.63, V.125, I.127, N.128, F.129, L.130, C.131, I.132, R.137, S.138, K.139, R.140, L.141, T.142, P.143, I.146, T.150, C.153, Y.154, I.158, Y.159, Q.160, A.161, Y.163, T.164, L.169, Y.377 Ligands: XMQ.1 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.62, A:V.63, A:V.125, A:I.127, A:I.127, A:L.130, A:L.130, A:I.132, A:I.146, A:I.146, A:Y.154, A:A.161, A:Y.163, A:Y.163, A:Y.163, A:Y.163, A:Y.377 Hydrogen bonds: A:Y.62, A:F.129, A:L.130, A:L.130, A:I.132, A:R.137, A:S.138, A:R.140, A:L.141, A:T.142, A:T.142 Water bridges: A:R.137, A:K.139, A:K.139 Salt bridges: A:R.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brand, S. et al., Lead optimization of a pyrazole sulfonamide series of Trypanosoma brucei N-myristoyltransferase inhibitors: identification and evaluation of CNS penetrant compounds as potential treatments for stage 2 human African trypanosomiasis. J. Med. Chem. (2014)

Release Date

2014-12-03

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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