SMTL ID : 4uwk.1

Discovery of (2S)-8-((3R)-3-Methylmorpholin-4-yl)-1-(3-methyl-2-oxo- butyl)-2-(trifluoromethyl)-3,4-dihydro-2H-pyrimido(1,2-a)pyrimidin-6- one: a Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.476, K.478 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.476, A:T.476 Salt bridges: A:K.478

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: T.169, P.171, R.261, A.265 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.169, A:R.261

1 x UJB: (2S)-1-[(5-chloro-2-thienyl)methyl]-8-[(3R,5R)-3,5-dimethylmorpholin-4-yl]-2-(trifluoromethyl)-3,4-dihydro-2H-pyrimido[1,2-a]pyrimidin-6-one(Non-covalent)

UJB.3: 14 residues within 4Å: Chain A: F.334, S.336, P.340, I.356, K.358, Y.392, M.404, Q.405, F.406, I.407, S.409, L.472, I.482, D.483 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.334, A:I.356, A:Y.392, A:M.404, A:L.472, A:I.482, A:I.482 Hydrogen bonds: A:I.407, A:D.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pasquier, B. et al., Discovery of (2S)-8-[(3R)-3-Methylmorpholin-4-Yl]-1-(3-Methyl-2-Oxo-Butyl)-2-(Trifluoromethyl)-3,4-Dihydro-2H-Pyrimido[1,2-A]Pyrimidin-6-One: A Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors. J.Med.Chem. (2015)

Release Date

2014-11-26

Peptides

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3

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