SMTL ID : 4uwl.1

Discovery of (2S)-8-((3R)-3-Methylmorpholin-4-yl)-1-(3-methyl-2-oxo- butyl)-2-(trifluoromethyl)-3,4-dihydro-2H-pyrimido(1,2-a)pyrimidin-6- one: a Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.115, Y.214, Y.218, Q.371, K.393 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.115, A:Y.218 Water bridges: A:Q.371, A:S.374, A:S.374 SO4.2: 4 residues within 4Å: Chain A: F.334, K.335, S.336 Ligands: 7A5.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.336

1 x 7A5: (8S)-2-[(3R)-3-methylmorpholin-4-yl]-9-(3-methyl-2-oxobutyl)-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one(Non-covalent)

7A5.3: 15 residues within 4Å: Chain A: F.334, S.336, P.340, I.356, K.358, Y.392, M.404, Q.405, F.406, I.407, P.411, L.472, I.482, D.483 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.356, A:Y.392, A:M.404, A:P.411, A:L.472, A:I.482 Hydrogen bonds: A:K.358, A:I.407, A:D.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pasquier, B. et al., Discovery of (2S)-8-[(3R)-3-Methylmorpholin-4-Yl]-1-(3-Methyl-2-Oxo-Butyl)-2-(Trifluoromethyl)-3,4-Dihydro-2H-Pyrimido[1,2-A]Pyrimidin-6-One: A Novel Potent and Selective Inhibitor of Vps34 for the Treatment of Solid Tumors. J.Med.Chem. (2015)

Release Date

2014-11-26

Peptides

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3

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