SMTL ID : 4uyd.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1,3-dimethyl-2-oxo-2,3- dihydro-1H-1,3-benzodiazole-5-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: W.51, P.52, I.116, M.119 Ligands: V1T.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.116

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.70, I.71, K.72, T.73, N.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.70, A:K.72, A:T.73, A:T.73, A:T.73

1 x V1T: 1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxamide(Non-covalent)

V1T.3: 10 residues within 4Å: Chain A: W.51, P.52, F.53, Q.55, V.57, L.62, L.64, N.110, I.116 Ligands: DMS.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.52, A:L.62 Hydrogen bonds: A:Q.55, A:N.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demont, E.H. et al., 1,3-Dimethyl Benzimidazolones are Potent, Selective Inhibitors of the Brpf1 Bromodomain. Acs Med.Chem.Lett. (2014)

Release Date

2014-09-17

Peptides

BROMODOMAIN-CONTAINING PROTEIN 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BROMODOMAIN-CONTAINING PROTEIN 4