SMTL ID : 4uza.1

STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VIII - PHOSPHATE COMPLEX - 2.4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.19, E.133, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:E.133 NAG.3: 3 residues within 4Å: Chain B: N.19, E.133, R.136 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.19, B:E.133 NAG.5: 3 residues within 4Å: Chain C: N.19, E.133, R.136 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.19, C:E.133

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.332, H.335, R.339, C.355 Chain B: K.326, S.362 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.362, B:S.362 Salt bridges: B:K.326, A:R.332, A:H.335, A:R.339 PO4.4: 6 residues within 4Å: Chain B: R.332, H.335, R.339, C.355 Chain C: K.326, S.362 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.362, C:S.362 Salt bridges: C:K.326, B:R.332, B:H.335, B:R.339 PO4.6: 6 residues within 4Å: Chain A: K.326, S.362 Chain C: R.332, H.335, R.339, C.355 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A Salt bridges: C:R.332, C:H.335, C:R.339, A:K.326 Hydrogen bonds: A:S.362, A:S.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kakugawa, S. et al., Notum Deacylates Wnt Proteins to Suppress Signalling Activity. Nature (2015)

Release Date

2015-02-25

Peptides

PROTEIN NOTUM HOMOLOG: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PROTEIN NOTUM HOMOLOG