SMTL ID : 4v03.1

MinD cell division protein, Aquifex aeolicus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.12, G.13, V.14, G.15, K.16, T.17, T.18, R.44, N.174, R.175, P.205, E.206, E.207, L.210, V.211, T.214 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:T.17, A:T.18, A:T.18, A:N.174, A:R.175, A:P.205, A:E.207, A:T.214 Water bridges: A:R.44, A:R.44 Salt bridges: A:K.16, A:R.44, A:R.44 pi-Cation interactions: A:R.175 ADP.3: 18 residues within 4Å: Chain B: G.12, G.13, V.14, G.15, K.16, T.17, T.18, R.44, N.174, R.175, I.204, P.205, E.206, E.207, L.210, V.211, T.214 Ligands: MG.4 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:G.13, B:V.14, B:G.15, B:K.16, B:T.17, B:T.17, B:T.18, B:T.18, B:N.174, B:R.175, B:P.205, B:E.207, B:T.214, B:T.214 Water bridges: B:K.16, B:T.17, B:D.40, B:R.44, B:R.44 Salt bridges: B:K.16, B:R.44, B:R.44 pi-Cation interactions: B:R.175

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.17, D.40 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.17, H2O.1, H2O.1, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain B: T.17, D.40 Ligands: ADP.3 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.17, H2O.3, H2O.3, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosal, D. et al., Mincd Cell Division Proteins Form Alternating Copolymeric Cytomotive Filaments. Nat.Commun. (2014)

Release Date

2015-01-14

Peptides

SITE-DETERMINING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SITE-DETERMINING PROTEIN