SMTL ID : 4v0h.1 (3 other biounits)

Human metallo beta lactamase domain containing protein 1 (hMBLAC1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.114, H.116, H.119, H.169, D.192 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.114, A:H.116, A:H.169, A:D.192, H2O.3 FE.2: 6 residues within 4Å: Chain A: D.118, H.119, D.192, H.231 Ligands: FE.1, GOL.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.119, A:D.192, A:H.231, H2O.3 FE.4: 5 residues within 4Å: Chain B: H.114, H.116, H.169, D.192 Ligands: FE.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.114, B:H.116, B:H.169, B:D.192, H2O.8 FE.5: 6 residues within 4Å: Chain B: D.118, H.119, D.192, H.231 Ligands: FE.4, GOL.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.118, B:H.119, B:D.192, B:H.231, H2O.8

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: D.118, H.231 Chain B: D.136, Y.144 Ligands: FE.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.136 GOL.6: 7 residues within 4Å: Chain A: D.136, Y.144 Chain B: A.40, H.116, D.118, H.231 Ligands: FE.5 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.118, B:D.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettinati, I. et al., Biosynthesis of histone messenger RNA employs a specific 3' end endonuclease. Elife (2018)

Release Date

2016-01-13

Peptides

METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROTEIN 1 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROTEIN 1 1

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