SMTL ID : 4v11.1

Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.32, D.38, D.92, Y.93, D.94 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.32, A:D.38, A:D.92, A:Y.93, H2O.1 CA.2: 5 residues within 4Å: Chain A: M.31, D.32, D.92, D.94 Ligands: CA.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:M.31, A:D.92, A:D.94, H2O.1, H2O.1 CA.3: 2 residues within 4Å: Chain A: K.53, K.54 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: C.6, L.23, E.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24, A:E.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, N. et al., Phosphorylation of Synaptic Vesicle Protein 2A at Thr84 by Casein Kinase 1 Family Kinases Controls the Specific Retrieval of Synaptotagmin-1. J.Neurosci. (2015)

Release Date

2015-02-25

Peptides

SYNAPTOTAGMIN-1: A
SYNAPTIC VESICLE GLYCOPROTEIN 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SYNAPTOTAGMIN-1

SYNAPTIC VESICLE GLYCOPROTEIN 2A