SMTL ID : 4v1v.1

Heterocyclase in complex with substrate and Cofactor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-oligomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.203, C.206, C.311, C.314 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.311, A:C.314 ZN.5: 4 residues within 4Å: Chain B: C.203, C.206, C.311, C.314 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.203, B:C.311, B:C.314

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 20 residues within 4Å: Chain A: R.344, T.351, K.409, Q.415, S.419, C.422, E.423, E.426, R.427, A.533, A.534, G.535, N.536, Q.544, E.548, R.552, R.636, E.640 Ligands: MG.3, MG.4 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.344, A:T.351, A:K.409, A:Q.415, A:Q.415, A:E.423, A:E.426, A:E.426, A:R.427, A:A.534, A:N.536, A:Q.544, A:R.552, A:R.636 Salt bridges: A:K.409, A:R.636 pi-Cation interactions: A:R.344, A:R.344 ANP.6: 20 residues within 4Å: Chain B: R.344, T.351, K.409, Q.415, S.419, C.422, E.423, E.426, A.533, A.534, G.535, N.536, E.540, Q.544, E.548, R.552, R.636, E.640 Ligands: MG.7, MG.8 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:R.344, B:R.344, B:K.409, B:K.409, B:Q.415, B:E.426, B:A.534, B:N.536, B:Q.544, B:R.552, B:R.636 Salt bridges: B:K.409, B:R.636 pi-Cation interactions: B:R.344

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.551, R.636, E.640 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.640 MG.4: 2 residues within 4Å: Chain A: E.548 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.548 MG.7: 7 residues within 4Å: Chain B: K.409, E.551, R.552, F.624, R.636, E.640 Ligands: ANP.6 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.551, B:E.640 MG.8: 5 residues within 4Å: Chain B: E.426, R.427, N.532, E.548 Ligands: ANP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.548

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koehnke, J. et al., Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing. Nat.Chem.Biol. (2015)

Release Date

2015-01-14

Peptides

LYND: AB
LYND: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

LYND

LYND

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