SMTL ID : 4v24.1 (1 other biounit)

Sphingosine kinase 1 in complex with PF-543

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GYR: {(2R)-1-[4-({3-METHYL-5-[(PHENYLSULFONYL)METHYL]PHENOXY}METHYL)BENZYL]PYRROLIDIN-2-YL}METHANOL(Non-covalent)

GYR.1: 21 residues within 4Å: Chain A: S.176, F.181, I.182, V.185, D.186, F.200, T.204, L.267, L.269, L.276, M.280, A.282, F.296, V.298, L.307, L.310, F.311, M.314, H.319, L.327, A.347 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.182, A:V.185, A:F.200, A:L.267, A:L.269, A:A.282, A:F.296, A:F.296, A:F.296, A:F.311, A:F.311 Water bridges: A:G.350 Salt bridges: A:D.186

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: R.79, W.80 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.79, A:W.80 Water bridges: A:R.24, A:T.58, A:T.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Crystal Structure of Sphingosine Kinase 1 with Pf-543. Acs Med.Chem.Lett. (2014)

Release Date

2014-10-15

Peptides

SPHINGOSINE KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SPHINGOSINE KINASE 1

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