SMTL ID : 4v3d.1 (1 other biounit)

The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: N.40, T.42 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.42 Hydrogen bonds: B:T.42, B:T.42 NAG-NAG.3: 3 residues within 4Å: Chain B: L.7, N.23, S.25 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-MAN.2: 4 residues within 4Å: Chain B: A.83, P.85, L.86, N.112 No protein-ligand interaction detected (PLIP)

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.4: 30 residues within 4Å: Chain A: F.189 Chain B: M.6, L.7, N.23, A.24, H.32, L.34, Q.50, T.58, G.61, L.62, Y.65, Q.68, F.69, V.73, L.82, I.88, L.92, F.107, V.109, V.111, F.116, T.140, R.149, T.150, E.153, L.154, F.157, T.161, Y.165 23 PLIP interactions: 22 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.6, B:H.32, B:L.34, B:Y.65, B:Y.65, B:Y.65, B:F.69, B:F.69, B:V.73, B:L.82, B:I.88, B:L.92, B:F.107, B:V.109, B:V.111, B:F.116, B:F.116, B:T.140, B:T.150, B:F.157, B:Y.165, A:F.189 Hydrogen bonds: B:E.153

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain B: N.148 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, C.K.Y. et al., Structural Conservation Despite Huge Sequence Diversity Allows Epcr Binding by the Pfemp1 Family Implicated in Severe Childhood Malaria. Cell Host Microbe. (2015)

Release Date

2014-12-17

Peptides

HB3VAR03 CIDRA DOMAIN: A
ENDOTHELIAL PROTEIN C RECEPTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HB3VAR03 CIDRA DOMAIN

ENDOTHELIAL PROTEIN C RECEPTOR

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