SMTL ID : 4v3e.1

The CIDRa domain from IT4var07 PfEMP1 bound to endothelial protein C receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-MAN.1: 5 residues within 4Å: Chain B: A.83, F.84, P.85, L.86, N.112 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain B: N.148, Y.152, E.156 No protein-ligand interaction detected (PLIP)

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.3: 26 residues within 4Å: Chain B: M.6, N.23, A.24, H.32, L.34, W.55, T.58, L.62, Y.65, Q.68, F.69, L.72, V.76, L.82, I.88, L.92, V.109, F.116, W.126, T.140, L.144, R.149, L.154, F.157, T.161, Y.165 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:H.32, B:L.34, B:W.55, B:T.58, B:Y.65, B:F.69, B:F.69, B:L.72, B:V.76, B:L.82, B:I.88, B:L.92, B:V.109, B:F.116, B:W.126, B:L.144, B:F.157, B:F.157, B:F.157, B:T.161, B:Y.165

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain B: L.7, Q.21, N.23, L.30 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.30 Hydrogen bonds: B:Q.21, B:N.23 NAG.5: 4 residues within 4Å: Chain B: E.35, G.36, N.40, T.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.35, B:N.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, C.K.Y. et al., Structural Conservation Despite Huge Sequence Diversity Allows Epcr Binding by the Pfemp1 Family Implicated in Severe Childhood Malaria. Cell Host Microbe. (2015)

Release Date

2014-12-17

Peptides

IT4VAR07 CIDRA: A
ENDOTHELIAL PROTEIN C RECEPTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IT4VAR07 CIDRA

ENDOTHELIAL PROTEIN C RECEPTOR