SMTL ID : 4w6q.1

Glycosyltransferase C from Streptococcus agalactiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

1 x SER: SERINE(Non-covalent)

SER.1: 6 residues within 4Å: Chain A: K.149, L.330, N.331 Chain D: K.273, N.274, R.307 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:K.273, D:N.274, D:R.307, A:K.149, A:N.331

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 14 residues within 4Å: Chain A: T.18, H.158, P.176, R.181, Y.197, Y.213, Q.214, D.216, L.219, M.233, P.246, Y.247, K.248, A.251 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.176, A:L.219 Hydrogen bonds: A:Q.214, A:Q.214, A:D.216, A:Y.247, A:K.248 Water bridges: A:P.176, A:Y.247 Salt bridges: A:R.181, A:R.181, A:K.248, A:K.248 pi-Stacking: A:Y.213 UDP.3: 14 residues within 4Å: Chain B: T.18, H.158, P.176, R.181, Y.197, Y.213, Q.214, D.216, L.219, Y.244, P.246, Y.247, K.248, A.251 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.176, B:L.219 Hydrogen bonds: B:Q.214, B:Q.214, B:D.216, B:Y.244, B:Y.247, B:Y.247, B:K.248 Salt bridges: B:R.181, B:R.181, B:K.248, B:K.248 pi-Stacking: B:Y.213 UDP.4: 15 residues within 4Å: Chain C: T.18, H.158, P.176, R.181, F.182, Y.197, Y.213, Q.214, D.216, Y.244, C.245, P.246, Y.247, K.248, A.251 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:P.176, C:Y.197 Hydrogen bonds: C:T.18, C:Q.214, C:Q.214, C:D.216, C:Y.247, C:K.248 Water bridges: C:R.181, C:R.181, C:D.216 Salt bridges: C:R.181, C:R.181, C:K.248, C:K.248 pi-Stacking: C:Y.213 UDP.5: 14 residues within 4Å: Chain D: T.18, H.158, P.176, R.181, F.182, Y.197, Y.213, Q.214, D.216, L.219, P.246, Y.247, K.248, A.251 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:P.176, D:Y.197, D:L.219 Hydrogen bonds: D:T.18, D:Q.214, D:Q.214, D:D.216, D:D.216, D:C.245, D:Y.247, D:K.248 Water bridges: D:R.181, D:R.181 Salt bridges: D:R.181, D:R.181, D:K.248, D:K.248 pi-Stacking: D:Y.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, F. et al., A conserved domain is crucial for acceptor substrate binding in a family of glucosyltransferases. J.Bacteriol. (2015)

Release Date

2015-07-15

Peptides

glucosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

glucosyltransferase