SMTL ID : 4w79.1

Crystal Structure of Human Protein N-terminal Glutamine Amidohydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.60, D.79, Y.80, H.148, N.176, I.179 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.60, A:D.79, A:N.176 Water bridges: A:N.176, A:N.176 EDO.2: 7 residues within 4Å: Chain A: P.16, A.20, C.21, V.22, K.34, L.35, Y.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.20, A:V.22, A:V.22 Water bridges: A:L.35 EDO.3: 5 residues within 4Å: Chain A: W.33, K.34, Y.163, P.164, I.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.34, A:K.34 EDO.4: 2 residues within 4Å: Chain A: K.40, N.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.40, A:N.41 Water bridges: A:N.41 EDO.5: 2 residues within 4Å: Chain A: H.10 Ligands: SO4.11 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: R.18, L.102, P.103, F.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.104, A:F.104 Water bridges: A:R.18, A:R.18 Salt bridges: A:R.18 SO4.7: 4 residues within 4Å: Chain A: R.146, Y.163, P.164, C.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.163, A:C.165 Water bridges: A:E.167 Salt bridges: A:R.146 SO4.8: 5 residues within 4Å: Chain A: W.65, K.66, G.72, D.73, G.74 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.66, A:G.72, A:G.72, A:G.74 Water bridges: A:Q.67, A:D.114, A:K.117, A:K.117 Salt bridges: A:K.66 SO4.9: 2 residues within 4Å: Chain A: K.117, S.118 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.118 Water bridges: A:K.117, A:K.117, A:K.117, A:K.117 Salt bridges: A:K.117 SO4.10: 3 residues within 4Å: Chain A: D.120, P.124, R.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.120 Salt bridges: A:R.127 SO4.11: 5 residues within 4Å: Chain A: A.7, A.8, V.9, H.10 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.9, A:H.10 Salt bridges: A:H.10

3 x CO3: CARBONATE ION(Non-functional Binders)

CO3.12: 5 residues within 4Å: Chain A: Y.51, V.132, C.134, A.189, R.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.132 Water bridges: A:C.134 CO3.13: 3 residues within 4Å: Chain A: H.42, D.43, Q.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.43 CO3.14: 3 residues within 4Å: Chain A: Y.51, R.199, F.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.199, A:R.199

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.15: 6 residues within 4Å: Chain A: C.134, D.136, S.137, G.186, W.187, G.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.136, A:S.137, A:G.188 Water bridges: A:G.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, M.S. et al., Crystal structure of human protein N-terminal glutamine amidohydrolase, an initial component of the N-end rule pathway. Plos One (2014)

Release Date

2014-09-17

Peptides

Protein N-terminal glutamine amidohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein N-terminal glutamine amidohydrolase