SMTL ID : 4w8n.1

The crystal structure of hemagglutinin from a swine influenza virus (A/swine/Missouri/2124514/2006)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-mer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.16 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: R.27, N.28 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.27 Hydrogen bonds: A:N.28 NAG.3: 4 residues within 4Å: Chain A: N.169, T.171, W.240, V.242 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.242 Hydrogen bonds: A:W.240 NAG.4: 4 residues within 4Å: Chain B: A.36, N.150, R.153, N.154 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain C: N.290 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.290 NAG.6: 1 residues within 4Å: Chain C: N.16 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain C: R.27, N.28 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:R.27 Hydrogen bonds: C:N.28 NAG.8: 4 residues within 4Å: Chain C: N.169, T.171, W.240, V.242 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.242 Hydrogen bonds: C:N.169, C:W.240 NAG.9: 1 residues within 4Å: Chain E: N.290 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain E: N.16 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.16 NAG.11: 3 residues within 4Å: Chain E: N.169, W.240, V.242 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.242 Hydrogen bonds: E:N.169, E:W.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pappas, C. et al., Assessment of transmission, pathogenesis and adaptation of H2 subtype influenza viruses in ferrets. Virology (2015)

Release Date

2015-02-11

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin