SMTL ID : 4w9w.1

Crystal Structure of BMP-2-inducible kinase in complex with small molecule AZD-7762

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x YDJ: 5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide(Non-covalent)

YDJ.1: 14 residues within 4Å: Chain A: L.19, A.20, V.27, A.39, E.93, Y.94, C.95, R.96, G.98, Q.99, E.146, N.147, L.149, C.159 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.19, A:A.20, A:Y.94 Hydrogen bonds: A:E.93, A:C.95, A:Q.99, A:N.147 Water bridges: A:D.160 YDJ.2: 7 residues within 4Å: Chain A: N.251, Y.275, F.276, K.279, F.280, I.295, P.296 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.295 Hydrogen bonds: A:N.251, A:N.251, A:N.251

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: K.41, E.57, M.61, V.71, M.92, C.159, D.160, F.161 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.41, A:E.57, A:E.57, A:D.160, A:F.161 EDO.4: 4 residues within 4Å: Chain A: K.107, G.111, T.113, E.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.116 Water bridges: A:K.107, A:K.107, A:K.107 EDO.5: 4 residues within 4Å: Chain A: Q.119, C.122, F.278, A.283 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.115, A:E.126 EDO.6: 6 residues within 4Å: Chain A: H.67, E.126, A.129, R.130, P.286, V.287 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.126 Water bridges: A:H.67, A:E.126, A:E.126 EDO.7: 3 residues within 4Å: Chain A: G.238, F.240, R.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.240, A:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Family-wide Structural Analysis of Human Numb-Associated Protein Kinases. Structure (2016)

Release Date

2014-09-10

Peptides

BMP-2-inducible protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BMP-2-inducible protein kinase