SMTL ID : 4wbh.1

STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I APO - 2.2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.375, H.378 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: S.361 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.56, H.58, R.184 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: R.184 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain B: N.62, V.65, E.176, R.179 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.65 Hydrogen bonds: B:N.62, B:E.176

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain B: S.83, R.85, N.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.83, B:R.84, B:N.140 Salt bridges: B:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kakugawa, S. et al., Notum deacylates Wnt proteins to suppress signalling activity. Nature (2015)

Release Date

2015-02-25

Peptides

Protein notum homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein notum homolog

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