- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.53 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 231 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
- MN.12: 1 residues within 4Å:- Chain A: A.1017
 No protein-ligand interaction detected (PLIP)- MN.14: 2 residues within 4Å:- Chain A: G.778, A.806
 No protein-ligand interaction detected (PLIP)- MN.15: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.17: 1 residues within 4Å:- Chain A: U.119
 No protein-ligand interaction detected (PLIP)- MN.24: 2 residues within 4Å:- Chain A: G.2610, G.2635
 No protein-ligand interaction detected (PLIP)- MN.25: 2 residues within 4Å:- Chain A: G.428, G.432
 No protein-ligand interaction detected (PLIP)- MN.40: 2 residues within 4Å:- Chain A: C.723, A.839
 No protein-ligand interaction detected (PLIP)- MN.41: 1 residues within 4Å:- Chain A: A.1836
 No protein-ligand interaction detected (PLIP)- MN.42: 3 residues within 4Å:- Chain A: G.120, U.149, A.150
 No protein-ligand interaction detected (PLIP)- MN.43: 3 residues within 4Å:- Chain A: A.219, A.476, U.477
 No protein-ligand interaction detected (PLIP)- MN.44: 2 residues within 4Å:- Chain A: U.336, U.484
 No protein-ligand interaction detected (PLIP)- MN.45: 2 residues within 4Å:- Chain A: A.1228, G.1229
 No protein-ligand interaction detected (PLIP)- MN.46: 2 residues within 4Å:- Chain A: A.373, U.374
 No protein-ligand interaction detected (PLIP)- MN.47: 3 residues within 4Å:- Chain A: G.1695, C.1696, G.2031
 No protein-ligand interaction detected (PLIP)- MN.48: 3 residues within 4Å:- Chain A: C.1334, U.1683, G.2736
 No protein-ligand interaction detected (PLIP)- MN.49: 2 residues within 4Å:- Chain A: G.2727, C.2730
 No protein-ligand interaction detected (PLIP)- MN.50: 2 residues within 4Å:- Chain A: G.2651, G.2652
 No protein-ligand interaction detected (PLIP)- MN.51: 2 residues within 4Å:- Chain A: A.2775, U.2781
 No protein-ligand interaction detected (PLIP)- MN.52: 1 residues within 4Å:- Chain A: G.2605
 No protein-ligand interaction detected (PLIP)- MN.53: 3 residues within 4Å:- Chain A: A.868, G.869, C.988
 No protein-ligand interaction detected (PLIP)- MN.54: 1 residues within 4Å:- Chain A: G.2522
 No protein-ligand interaction detected (PLIP)- MN.55: 2 residues within 4Å:- Chain A: U.787, U.799
 No protein-ligand interaction detected (PLIP)- MN.56: 3 residues within 4Å:- Chain A: U.1431, A.1432, C.1648
 No protein-ligand interaction detected (PLIP)- MN.57: 2 residues within 4Å:- Chain A: G.425, G.426
 No protein-ligand interaction detected (PLIP)- MN.58: 3 residues within 4Å:- Chain A: U.905, A.906, U.958
 No protein-ligand interaction detected (PLIP)- MN.59: 1 residues within 4Å:- Chain A: G.1320
 No protein-ligand interaction detected (PLIP)- MN.60: 4 residues within 4Å:- Chain A: G.2608, G.2609, G.2610, U.2611
 No protein-ligand interaction detected (PLIP)- MN.61: 3 residues within 4Å:- Chain A: U.2276, G.2278, G.2280
 No protein-ligand interaction detected (PLIP)- MN.62: 4 residues within 4Å:- Chain A: A.828, U.829, A.2616
- Chain C: M.225
 No protein-ligand interaction detected (PLIP)- MN.63: 4 residues within 4Å:- Chain A: C.781, C.782, U.1665, A.1666
 No protein-ligand interaction detected (PLIP)- MN.64: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.65: 2 residues within 4Å:- Chain A: A.2379, G.2380
 No protein-ligand interaction detected (PLIP)- MN.66: 2 residues within 4Å:- Chain A: U.899, G.900
 No protein-ligand interaction detected (PLIP)- MN.67: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.68: 3 residues within 4Å:- Chain A: A.383, G.384, U.385
 No protein-ligand interaction detected (PLIP)- MN.69: 1 residues within 4Å:- Chain A: G.534
 No protein-ligand interaction detected (PLIP)- MN.70: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.71: 2 residues within 4Å:- Chain A: A.2373, G.2410
 No protein-ligand interaction detected (PLIP)- MN.72: 1 residues within 4Å:- Chain A: G.1329
 No protein-ligand interaction detected (PLIP)- MN.73: 4 residues within 4Å:- Chain A: G.1862, C.1863, A.1927, A.1997
 No protein-ligand interaction detected (PLIP)- MN.74: 1 residues within 4Å:- Chain A: U.1060
 No protein-ligand interaction detected (PLIP)- MN.75: 3 residues within 4Å:- Chain A: G.1496, A.1497, G.2729
 No protein-ligand interaction detected (PLIP)- MN.76: 2 residues within 4Å:- Chain A: U.1499, G.1500
 No protein-ligand interaction detected (PLIP)- MN.77: 1 residues within 4Å:- Chain A: U.2390
 No protein-ligand interaction detected (PLIP)- MN.78: 3 residues within 4Å:- Chain A: C.421, U.438, A.455
 No protein-ligand interaction detected (PLIP)- MN.90: 1 residues within 4Å:- Chain A: C.1009
 No protein-ligand interaction detected (PLIP)- MN.110: 1 residues within 4Å:- Chain A: G.534
 No protein-ligand interaction detected (PLIP)- MN.111: 2 residues within 4Å:- Chain A: G.295, G.296
 No protein-ligand interaction detected (PLIP)- MN.112: 3 residues within 4Å:- Chain A: G.504, G.514, G.515
 No protein-ligand interaction detected (PLIP)- MN.117: 1 residues within 4Å:- Chain A: G.2634
 No protein-ligand interaction detected (PLIP)- MN.118: 3 residues within 4Å:- Chain A: C.572, A.573
- Chain H: E.117
 No protein-ligand interaction detected (PLIP)- MN.119: 1 residues within 4Å:- Chain A: G.2877
 No protein-ligand interaction detected (PLIP)- MN.120: 1 residues within 4Å:- Chain A: A.1019
 No protein-ligand interaction detected (PLIP)- MN.121: 2 residues within 4Å:- Chain A: A.1073, G.1074
 No protein-ligand interaction detected (PLIP)- MN.122: 1 residues within 4Å:- Chain A: G.369
 No protein-ligand interaction detected (PLIP)- MN.123: 1 residues within 4Å:- Chain A: C.2468
 No protein-ligand interaction detected (PLIP)- MN.124: 2 residues within 4Å:- Chain A: G.214, G.215
 No protein-ligand interaction detected (PLIP)- MN.125: 1 residues within 4Å:- Chain A: C.2639
 No protein-ligand interaction detected (PLIP)- MN.126: 2 residues within 4Å:- Chain A: G.2572, U.2573
 No protein-ligand interaction detected (PLIP)- MN.127: 2 residues within 4Å:- Chain A: A.343, G.381
 No protein-ligand interaction detected (PLIP)- MN.128: 2 residues within 4Å:- Chain A: G.189, G.190
 No protein-ligand interaction detected (PLIP)- MN.129: 1 residues within 4Å:- Chain A: G.893
 No protein-ligand interaction detected (PLIP)- MN.130: 1 residues within 4Å:- Chain A: A.185
 No protein-ligand interaction detected (PLIP)- MN.131: 2 residues within 4Å:- Chain A: A.2050, G.2645
 No protein-ligand interaction detected (PLIP)- MN.132: 2 residues within 4Å:- Chain A: G.80, G.82
 No protein-ligand interaction detected (PLIP)- MN.133: 2 residues within 4Å:- Chain A: G.1283, A.1284
 No protein-ligand interaction detected (PLIP)- MN.134: 2 residues within 4Å:- Chain A: A.2760, C.2797
 No protein-ligand interaction detected (PLIP)- MN.135: 1 residues within 4Å:- Chain A: U.1249
 No protein-ligand interaction detected (PLIP)- MN.138: 2 residues within 4Å:- Chain A: G.317, U.403
 No protein-ligand interaction detected (PLIP)- MN.139: 2 residues within 4Å:- Chain A: A.989, G.990
 No protein-ligand interaction detected (PLIP)- MN.140: 4 residues within 4Å:- Chain A: A.373, U.1248, G.1274, A.1275
 No protein-ligand interaction detected (PLIP)- MN.141: 3 residues within 4Å:- Chain A: C.1178, C.1179, G.1181
 No protein-ligand interaction detected (PLIP)- MN.142: 2 residues within 4Å:- Chain A: A.715, C.716
 No protein-ligand interaction detected (PLIP)- MN.143: 3 residues within 4Å:- Chain A: A.1396, G.1397, G.1398
 No protein-ligand interaction detected (PLIP)- MN.145: 2 residues within 4Å:- Chain A: A.14, G.15
 No protein-ligand interaction detected (PLIP)- MN.146: 4 residues within 4Å:- Chain A: U.1394, G.1395, U.1409, G.1411
 No protein-ligand interaction detected (PLIP)- MN.147: 2 residues within 4Å:- Chain A: C.2433, U.2435
 No protein-ligand interaction detected (PLIP)- MN.148: 3 residues within 4Å:- Chain A: A.222, G.223, U.473
 No protein-ligand interaction detected (PLIP)- MN.149: 2 residues within 4Å:- Chain A: U.521, G.522
 No protein-ligand interaction detected (PLIP)- MN.150: 4 residues within 4Å:- Chain A: C.195, A.202, G.2269, U.2270
 No protein-ligand interaction detected (PLIP)- MN.151: 3 residues within 4Å:- Chain A: C.1714, U.1715, G.2577
 No protein-ligand interaction detected (PLIP)- MN.152: 3 residues within 4Å:- Chain A: A.1996, A.1997, A.1998
 No protein-ligand interaction detected (PLIP)- MN.153: 4 residues within 4Å:- Chain A: G.2316, G.2352, G.2364, C.2412
 No protein-ligand interaction detected (PLIP)- MN.154: 3 residues within 4Å:- Chain A: C.2708, U.2709, A.2748
 No protein-ligand interaction detected (PLIP)- MN.155: 1 residues within 4Å:- Chain A: G.823
 No protein-ligand interaction detected (PLIP)- MN.156: 3 residues within 4Å:- Chain A: A.1807, C.1809, A.1810
 No protein-ligand interaction detected (PLIP)- MN.157: 2 residues within 4Å:- Chain A: G.2866
- Chain N: R.52
 No protein-ligand interaction detected (PLIP)- MN.158: 2 residues within 4Å:- Chain A: G.1005, G.1006
 No protein-ligand interaction detected (PLIP)- MN.159: 4 residues within 4Å:- Chain A: G.1309, A.1310, G.1691, C.1692
 No protein-ligand interaction detected (PLIP)- MN.160: 3 residues within 4Å:- Chain A: A.2295, A.2296, G.2298
 No protein-ligand interaction detected (PLIP)- MN.161: 2 residues within 4Å:- Chain A: A.1025
- Ligands: SPD.313
 No protein-ligand interaction detected (PLIP)- MN.162: 1 residues within 4Å:- Chain A: G.997
 No protein-ligand interaction detected (PLIP)- MN.163: 4 residues within 4Å:- Chain A: G.774, A.775, C.776, A.806
 No protein-ligand interaction detected (PLIP)- MN.164: 3 residues within 4Å:- Chain A: U.2101, G.2266
- Chain C: P.227
 No protein-ligand interaction detected (PLIP)- MN.165: 3 residues within 4Å:- Chain A: G.457, A.458, A.2434
 No protein-ligand interaction detected (PLIP)- MN.166: 2 residues within 4Å:- Chain A: G.1307, A.2032
 No protein-ligand interaction detected (PLIP)- MN.167: 4 residues within 4Å:- Chain A: U.871, C.2454, G.2455, G.2456
 No protein-ligand interaction detected (PLIP)- MN.168: 3 residues within 4Å:- Chain A: G.7, U.8, U.2916
 No protein-ligand interaction detected (PLIP)- MN.169: 2 residues within 4Å:- Chain A: A.615, A.1027
 No protein-ligand interaction detected (PLIP)- MN.170: 3 residues within 4Å:- Chain A: U.1338, A.1679, U.1680
 No protein-ligand interaction detected (PLIP)- MN.171: 3 residues within 4Å:- Chain A: A.1379, U.1646
- Chain R: I.55
 No protein-ligand interaction detected (PLIP)- MN.177: 1 residues within 4Å:- Chain A: A.354
 No protein-ligand interaction detected (PLIP)- MN.178: 1 residues within 4Å:- Chain A: C.2015
 No protein-ligand interaction detected (PLIP)- MN.179: 1 residues within 4Å:- Chain A: G.545
 No protein-ligand interaction detected (PLIP)- MN.180: 2 residues within 4Å:- Chain A: A.715, A.849
 No protein-ligand interaction detected (PLIP)- MN.181: 3 residues within 4Å:- Chain A: A.1744, A.1745, G.1746
 No protein-ligand interaction detected (PLIP)- MN.182: 2 residues within 4Å:- Chain A: G.1411, G.1412
 No protein-ligand interaction detected (PLIP)- MN.183: 2 residues within 4Å:- Chain A: A.784, G.802
 No protein-ligand interaction detected (PLIP)- MN.184: 1 residues within 4Å:- Chain A: C.2290
 No protein-ligand interaction detected (PLIP)- MN.185: 2 residues within 4Å:- Chain A: C.832, U.835
 No protein-ligand interaction detected (PLIP)- MN.186: 2 residues within 4Å:- Chain A: U.1011, G.1012
 No protein-ligand interaction detected (PLIP)- MN.187: 1 residues within 4Å:- Chain A: A.2411
 No protein-ligand interaction detected (PLIP)- MN.188: 2 residues within 4Å:- Chain A: C.491, G.492
 No protein-ligand interaction detected (PLIP)- MN.189: 3 residues within 4Å:- Chain A: C.988, A.989, G.990
 No protein-ligand interaction detected (PLIP)- MN.190: 1 residues within 4Å:- Chain A: U.1305
 No protein-ligand interaction detected (PLIP)- MN.191: 2 residues within 4Å:- Chain A: G.2516, G.2517
 No protein-ligand interaction detected (PLIP)- MN.192: 2 residues within 4Å:- Chain A: G.1711, C.2017
 No protein-ligand interaction detected (PLIP)- MN.193: 3 residues within 4Å:- Chain A: A.1034, C.1035, G.1225
 No protein-ligand interaction detected (PLIP)- MN.194: 2 residues within 4Å:- Chain A: G.1201, C.1202
 No protein-ligand interaction detected (PLIP)- MN.195: 4 residues within 4Å:- Chain A: C.2534, C.2600, G.2601, C.2602
 No protein-ligand interaction detected (PLIP)- MN.196: 2 residues within 4Å:- Chain A: C.1801, G.1803
 No protein-ligand interaction detected (PLIP)- MN.197: 3 residues within 4Å:- Chain A: C.785, A.1810, A.1811
 No protein-ligand interaction detected (PLIP)- MN.198: 3 residues within 4Å:- Chain A: A.1432, A.1647, C.1648
 No protein-ligand interaction detected (PLIP)- MN.199: 2 residues within 4Å:- Chain A: G.2615, A.2616
 No protein-ligand interaction detected (PLIP)- MN.200: 4 residues within 4Å:- Chain A: U.871, U.872, G.2456, A.2457
 No protein-ligand interaction detected (PLIP)- MN.201: 3 residues within 4Å:- Chain A: A.992, G.1006, U.1007
 No protein-ligand interaction detected (PLIP)- MN.202: 2 residues within 4Å:- Chain A: G.2054, A.2060
 No protein-ligand interaction detected (PLIP)- MN.203: 2 residues within 4Å:- Chain A: U.609, U.610
 No protein-ligand interaction detected (PLIP)- MN.204: 2 residues within 4Å:- Chain A: A.2545, A.2568
 No protein-ligand interaction detected (PLIP)- MN.205: 2 residues within 4Å:- Chain A: U.2068, A.2069
 No protein-ligand interaction detected (PLIP)- MN.206: 2 residues within 4Å:- Chain A: U.1802, G.1803
 No protein-ligand interaction detected (PLIP)- MN.207: 3 residues within 4Å:- Chain A: G.2712, G.2713, U.2714
 No protein-ligand interaction detected (PLIP)- MN.208: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.209: 2 residues within 4Å:- Chain A: C.1364, G.1365
 No protein-ligand interaction detected (PLIP)- MN.210: 4 residues within 4Å:- Chain A: A.2294, A.2296, G.2297, G.2298
 No protein-ligand interaction detected (PLIP)- MN.211: 2 residues within 4Å:- Chain A: C.2905, G.2906
 No protein-ligand interaction detected (PLIP)- MN.212: 1 residues within 4Å:- Chain A: A.952
 No protein-ligand interaction detected (PLIP)- MN.213: 1 residues within 4Å:- Chain A: G.1317
 No protein-ligand interaction detected (PLIP)- MN.214: 2 residues within 4Å:- Chain A: G.522, A.1275
 No protein-ligand interaction detected (PLIP)- MN.215: 1 residues within 4Å:- Chain A: G.1180
 No protein-ligand interaction detected (PLIP)- MN.216: 1 residues within 4Å:- Chain A: G.341
 No protein-ligand interaction detected (PLIP)- MN.217: 1 residues within 4Å:- Chain A: G.2029
 No protein-ligand interaction detected (PLIP)- MN.218: 2 residues within 4Å:- Chain A: G.2809
- Ligands: MG.39
 No protein-ligand interaction detected (PLIP)- MN.219: 2 residues within 4Å:- Chain A: G.2622, G.2624
 No protein-ligand interaction detected (PLIP)- MN.220: 1 residues within 4Å:- Chain A: G.27
 No protein-ligand interaction detected (PLIP)- MN.221: 2 residues within 4Å:- Chain A: C.1719, A.1720
 No protein-ligand interaction detected (PLIP)- MN.222: 1 residues within 4Å:- Chain A: C.2074
 No protein-ligand interaction detected (PLIP)- MN.223: 3 residues within 4Å:- Chain A: A.1044, A.1045, G.1046
 No protein-ligand interaction detected (PLIP)- MN.224: 2 residues within 4Å:- Chain A: G.2619, U.2620
 No protein-ligand interaction detected (PLIP)- MN.225: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.226: 2 residues within 4Å:- Chain A: A.2870, G.2884
 No protein-ligand interaction detected (PLIP)- MN.227: 3 residues within 4Å:- Chain A: C.861, C.862, G.1226
 No protein-ligand interaction detected (PLIP)- MN.228: 2 residues within 4Å:- Chain A: A.1708, A.1709
 No protein-ligand interaction detected (PLIP)- MN.229: 2 residues within 4Å:- Chain A: C.1335, U.1683
 No protein-ligand interaction detected (PLIP)- MN.230: 1 residues within 4Å:- Chain A: A.493
 No protein-ligand interaction detected (PLIP)- MN.231: 3 residues within 4Å:- Chain A: G.843, G.846
- Chain E: G.59
 No protein-ligand interaction detected (PLIP)- MN.232: 2 residues within 4Å:- Chain A: C.31, U.1238
 No protein-ligand interaction detected (PLIP)- MN.233: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.234: 3 residues within 4Å:- Chain A: G.2665, A.2666, G.2667
 No protein-ligand interaction detected (PLIP)- MN.235: 1 residues within 4Å:- Chain A: A.1200
 No protein-ligand interaction detected (PLIP)- MN.236: 2 residues within 4Å:- Chain A: A.1303, U.2642
 No protein-ligand interaction detected (PLIP)- MN.237: 2 residues within 4Å:- Chain A: A.571, C.572
 No protein-ligand interaction detected (PLIP)- MN.238: 3 residues within 4Å:- Chain A: C.2093, C.2275, U.2276
 No protein-ligand interaction detected (PLIP)- MN.239: 2 residues within 4Å:- Chain A: U.855, U.856
 No protein-ligand interaction detected (PLIP)- MN.240: 2 residues within 4Å:- Chain A: A.2830, G.2831
 No protein-ligand interaction detected (PLIP)- MN.241: 3 residues within 4Å:- Chain A: A.621, C.2044, A.2045
 No protein-ligand interaction detected (PLIP)- MN.242: 3 residues within 4Å:- Chain A: A.629, U.1287, G.1288
 No protein-ligand interaction detected (PLIP)- MN.243: 2 residues within 4Å:- Chain A: U.2061, C.2082
 No protein-ligand interaction detected (PLIP)- MN.244: 1 residues within 4Å:- Chain A: G.1663
 No protein-ligand interaction detected (PLIP)- MN.245: 4 residues within 4Å:- Chain A: G.197, A.198, A.200, C.201
 No protein-ligand interaction detected (PLIP)- MN.246: 5 residues within 4Å:- Chain A: A.1713, C.1714, U.1715, G.2577, C.2578
 No protein-ligand interaction detected (PLIP)- MN.247: 2 residues within 4Å:- Chain A: A.1685, G.1686
 No protein-ligand interaction detected (PLIP)- MN.248: 2 residues within 4Å:- Chain A: U.1043, C.1197
 No protein-ligand interaction detected (PLIP)- MN.249: 3 residues within 4Å:- Chain A: C.1351, C.1352, G.1369
 No protein-ligand interaction detected (PLIP)- MN.250: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.251: 4 residues within 4Å:- Chain A: G.2059, C.2082, A.2480, C.2526
 No protein-ligand interaction detected (PLIP)- MN.252: 2 residues within 4Å:- Chain A: G.876, A.989
 No protein-ligand interaction detected (PLIP)- MN.253: 2 residues within 4Å:- Chain A: G.1005, G.2056
 No protein-ligand interaction detected (PLIP)- MN.254: 3 residues within 4Å:- Chain A: G.2036, G.2037, U.2038
 No protein-ligand interaction detected (PLIP)- MN.255: 1 residues within 4Å:- Chain A: U.2043
 No protein-ligand interaction detected (PLIP)- MN.256: 2 residues within 4Å:- Chain A: G.2473, G.2529
 No protein-ligand interaction detected (PLIP)- MN.257: 4 residues within 4Å:- Chain A: G.2088, C.2528, G.2529
- Ligands: MPD.3
 No protein-ligand interaction detected (PLIP)- MN.258: 3 residues within 4Å:- Chain A: G.613, A.2475, C.2526
 No protein-ligand interaction detected (PLIP)- MN.259: 4 residues within 4Å:- Chain A: C.554, C.555, U.556, G.557
 No protein-ligand interaction detected (PLIP)- MN.260: 4 residues within 4Å:- Chain A: U.1305, A.1306, A.2032, C.2033
 No protein-ligand interaction detected (PLIP)- MN.261: 3 residues within 4Å:- Chain A: C.862, G.863, G.1226
 No protein-ligand interaction detected (PLIP)- MN.262: 2 residues within 4Å:- Chain A: G.496, A.499
 No protein-ligand interaction detected (PLIP)- MN.263: 2 residues within 4Å:- Chain A: A.1024, C.1026
 No protein-ligand interaction detected (PLIP)- MN.264: 2 residues within 4Å:- Chain A: G.907, A.955
 No protein-ligand interaction detected (PLIP)- MN.265: 2 residues within 4Å:- Chain A: G.496, G.498
 No protein-ligand interaction detected (PLIP)- MN.266: 2 residues within 4Å:- Chain A: A.2478, U.2533
 No protein-ligand interaction detected (PLIP)- MN.267: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.268: 1 residues within 4Å:- Chain A: G.604
 No protein-ligand interaction detected (PLIP)- MN.269: 3 residues within 4Å:- Chain A: G.2265, G.2269, U.2270
 No protein-ligand interaction detected (PLIP)- MN.270: 4 residues within 4Å:- Chain A: U.1067, G.1068, G.1069, A.1070
 No protein-ligand interaction detected (PLIP)- MN.271: 3 residues within 4Å:- Chain A: G.2083, G.2084, A.2085
 No protein-ligand interaction detected (PLIP)- MN.272: 2 residues within 4Å:- Chain A: U.829, G.2615
 No protein-ligand interaction detected (PLIP)- MN.273: 3 residues within 4Å:- Chain A: A.194, C.195, A.845
 No protein-ligand interaction detected (PLIP)- MN.274: 4 residues within 4Å:- Chain A: A.795, A.796, G.1657, A.1658
 No protein-ligand interaction detected (PLIP)- MN.275: 3 residues within 4Å:- Chain A: C.2737, A.2738, G.2741
 No protein-ligand interaction detected (PLIP)- MN.276: 2 residues within 4Å:- Chain A: A.2732, A.2733
 No protein-ligand interaction detected (PLIP)- MN.277: 5 residues within 4Å:- Chain A: C.1050, A.1052, A.1053, A.1054
- Chain H: K.40
 No protein-ligand interaction detected (PLIP)- MN.278: 2 residues within 4Å:- Chain A: U.619, A.2530
 No protein-ligand interaction detected (PLIP)- MN.279: 5 residues within 4Å:- Chain A: G.2474, A.2475, A.2524, C.2525, C.2526
 No protein-ligand interaction detected (PLIP)- MN.280: 5 residues within 4Å:- Chain A: A.1708, A.1709, G.1710, G.1711, G.2019
 No protein-ligand interaction detected (PLIP)- MN.281: 3 residues within 4Å:- Chain A: A.720, A.847, U.848
 No protein-ligand interaction detected (PLIP)- MN.282: 2 residues within 4Å:- Chain A: U.1007, C.2525
 No protein-ligand interaction detected (PLIP)- MN.283: 3 residues within 4Å:- Chain A: G.625, A.1291, G.1294
 No protein-ligand interaction detected (PLIP)- MN.284: 5 residues within 4Å:- Chain A: G.2079, G.2080, C.2602, G.2603, A.2604
 No protein-ligand interaction detected (PLIP)- MN.285: 3 residues within 4Å:- Chain A: A.1415, U.1416, G.1417
 No protein-ligand interaction detected (PLIP)- MN.286: 2 residues within 4Å:- Chain A: G.1855, G.1999
 No protein-ligand interaction detected (PLIP)- MN.287: 1 residues within 4Å:- Chain A: G.1672
 No protein-ligand interaction detected (PLIP)- MN.288: 3 residues within 4Å:- Chain A: G.221, U.473, A.474
 No protein-ligand interaction detected (PLIP)- MN.289: 3 residues within 4Å:- Chain A: U.1854, G.1855
- Chain C: R.221
 No protein-ligand interaction detected (PLIP)- MN.290: 2 residues within 4Å:- Chain A: U.2898, A.2899
 No protein-ligand interaction detected (PLIP)- MN.291: 1 residues within 4Å:- Chain A: A.126
 No protein-ligand interaction detected (PLIP)- MN.292: 1 residues within 4Å:- Chain A: G.208
 No protein-ligand interaction detected (PLIP)- MN.293: 3 residues within 4Å:- Chain A: U.995, G.996, G.997
 No protein-ligand interaction detected (PLIP)- MN.308: 2 residues within 4Å:- Chain A: G.1384, G.1385
 No protein-ligand interaction detected (PLIP)- MN.323: 6 residues within 4Å:- Chain A: G.2624, A.2625
- Chain C: H.232, G.233, P.240, I.241
 No protein-ligand interaction detected (PLIP)- MN.324: 3 residues within 4Å:- Chain A: C.789, C.1702
- Chain D: H.148
 1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.148
 - MN.325: 2 residues within 4Å:- Chain A: A.1231
- Chain J: N.17
 No protein-ligand interaction detected (PLIP)- MN.326: 4 residues within 4Å:- Chain 1: R.4, S.6
- Chain A: C.2494, A.2495
 No protein-ligand interaction detected (PLIP)- MN.328: 2 residues within 4Å:- Chain B: C.79, G.92
 No protein-ligand interaction detected (PLIP)- MN.330: 2 residues within 4Å:- Chain B: A.97, U.99
 No protein-ligand interaction detected (PLIP)- MN.334: 2 residues within 4Å:- Chain A: A.2840
- Chain D: K.206
 No protein-ligand interaction detected (PLIP)- MN.340: 3 residues within 4Å:- Chain A: A.254
- Chain J: G.44, R.47
 No protein-ligand interaction detected (PLIP)- MN.341: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MN.342: 6 residues within 4Å:- Chain K: L.3, T.43, S.44, R.45, G.92, W.93
 1 PLIP interactions:1 interactions with chain K- Metal complexes: K:T.43
 - MN.344: 5 residues within 4Å:- Chain A: G.370, U.371, C.378
- Chain S: V.65, S.66
 1 PLIP interactions:1 interactions with chain S- Metal complexes: S:V.65
 - MN.345: 2 residues within 4Å:- Chain A: U.344
- Chain S: P.78
 No protein-ligand interaction detected (PLIP)
- 91 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- MG.13: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MG.16: 2 residues within 4Å:- Chain A: G.2735, G.2736
 No protein-ligand interaction detected (PLIP)- MG.18: 3 residues within 4Å:- Chain A: A.1291, A.1292, G.1294
 No protein-ligand interaction detected (PLIP)- MG.19: 3 residues within 4Å:- Chain A: A.622, C.623, C.624
 No protein-ligand interaction detected (PLIP)- MG.20: 2 residues within 4Å:- Chain A: A.229, G.456
 No protein-ligand interaction detected (PLIP)- MG.21: 2 residues within 4Å:- Chain A: A.43, A.44
 No protein-ligand interaction detected (PLIP)- MG.22: 2 residues within 4Å:- Chain A: G.598
- Chain O: G.23
 No protein-ligand interaction detected (PLIP)- MG.23: 2 residues within 4Å:- Chain A: C.1730, G.1731
 No protein-ligand interaction detected (PLIP)- MG.26: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MG.27: 1 residues within 4Å:- Chain A: G.1414
 No protein-ligand interaction detected (PLIP)- MG.28: 1 residues within 4Å:- Chain A: A.1690
 No protein-ligand interaction detected (PLIP)- MG.29: 2 residues within 4Å:- Chain A: A.725, C.821
 No protein-ligand interaction detected (PLIP)- MG.30: 3 residues within 4Å:- Chain A: G.1244, G.1245, G.1278
 No protein-ligand interaction detected (PLIP)- MG.31: 2 residues within 4Å:- Chain A: A.2660, A.2661
 No protein-ligand interaction detected (PLIP)- MG.32: 1 residues within 4Å:- Chain A: C.1168
 No protein-ligand interaction detected (PLIP)- MG.33: 1 residues within 4Å:- Chain A: A.868
 No protein-ligand interaction detected (PLIP)- MG.34: 3 residues within 4Å:- Chain A: C.1362, A.1660, G.1691
 No protein-ligand interaction detected (PLIP)- MG.35: 2 residues within 4Å:- Chain A: U.2847, G.2848
 No protein-ligand interaction detected (PLIP)- MG.36: 2 residues within 4Å:- Chain A: U.995
- Chain B: U.88
 No protein-ligand interaction detected (PLIP)- MG.37: 4 residues within 4Å:- Chain A: U.2541, C.2542, G.2596, G.2597
 No protein-ligand interaction detected (PLIP)- MG.38: 2 residues within 4Å:- Chain A: U.569, G.584
 No protein-ligand interaction detected (PLIP)- MG.39: 5 residues within 4Å:- Chain A: U.2655, A.2803, A.2808, G.2809
- Ligands: MN.218
 No protein-ligand interaction detected (PLIP)- MG.79: 1 residues within 4Å:- Chain A: G.2012
 No protein-ligand interaction detected (PLIP)- MG.80: 2 residues within 4Å:- Chain A: A.617, G.620
 No protein-ligand interaction detected (PLIP)- MG.81: 2 residues within 4Å:- Chain A: U.1925, A.1926
 No protein-ligand interaction detected (PLIP)- MG.82: 3 residues within 4Å:- Chain A: A.49, G.177, A.178
 No protein-ligand interaction detected (PLIP)- MG.83: 2 residues within 4Å:- Chain A: A.542, G.543
 No protein-ligand interaction detected (PLIP)- MG.84: 2 residues within 4Å:- Chain A: G.42, A.43
 No protein-ligand interaction detected (PLIP)- MG.85: 2 residues within 4Å:- Chain A: A.53, G.54
 No protein-ligand interaction detected (PLIP)- MG.86: 3 residues within 4Å:- Chain A: C.46, G.217, G.218
 No protein-ligand interaction detected (PLIP)- MG.87: 2 residues within 4Å:- Chain A: G.416, A.468
 No protein-ligand interaction detected (PLIP)- MG.88: 4 residues within 4Å:- Chain A: A.322, C.323, A.324, A.326
 No protein-ligand interaction detected (PLIP)- MG.89: 1 residues within 4Å:- Chain A: C.966
 No protein-ligand interaction detected (PLIP)- MG.91: 2 residues within 4Å:- Chain A: G.422, A.423
 No protein-ligand interaction detected (PLIP)- MG.92: 6 residues within 4Å:- Chain A: U.684, G.693, G.694, G.696
- Ligands: MPD.6, MPD.9
 No protein-ligand interaction detected (PLIP)- MG.93: 3 residues within 4Å:- Chain A: A.2325, G.2326, A.2345
 No protein-ligand interaction detected (PLIP)- MG.94: 5 residues within 4Å:- Chain A: U.349, G.350, A.352, A.353, A.373
 No protein-ligand interaction detected (PLIP)- MG.95: 1 residues within 4Å:- Chain A: U.443
 No protein-ligand interaction detected (PLIP)- MG.96: 3 residues within 4Å:- Chain A: A.784, U.1805, U.1806
 No protein-ligand interaction detected (PLIP)- MG.97: 3 residues within 4Å:- Chain A: A.1965, C.1984, C.1985
 No protein-ligand interaction detected (PLIP)- MG.98: 1 residues within 4Å:- Chain A: C.2479
 No protein-ligand interaction detected (PLIP)- MG.99: 2 residues within 4Å:- Chain A: A.2629, G.2630
 No protein-ligand interaction detected (PLIP)- MG.100: 3 residues within 4Å:- Chain A: U.1732, A.1742, A.1744
 No protein-ligand interaction detected (PLIP)- MG.101: 4 residues within 4Å:- Chain A: U.830, C.831, C.836, G.837
 No protein-ligand interaction detected (PLIP)- MG.102: 3 residues within 4Å:- Chain A: C.1994, G.1995, G.2619
 No protein-ligand interaction detected (PLIP)- MG.103: 4 residues within 4Å:- Chain A: C.2708, U.2711, G.2712, U.2751
 No protein-ligand interaction detected (PLIP)- MG.104: 2 residues within 4Å:- Chain A: C.252, A.2459
 No protein-ligand interaction detected (PLIP)- MG.105: 3 residues within 4Å:- Chain A: C.1968, U.1970, U.1971
 No protein-ligand interaction detected (PLIP)- MG.106: 4 residues within 4Å:- Chain A: U.1338, U.1339, C.1651
- Ligands: MPD.5
 No protein-ligand interaction detected (PLIP)- MG.107: 1 residues within 4Å:- Chain A: G.1675
 No protein-ligand interaction detected (PLIP)- MG.108: 3 residues within 4Å:- Chain A: G.1931, C.1932, G.1957
 No protein-ligand interaction detected (PLIP)- MG.109: 2 residues within 4Å:- Chain A: G.1838, G.2230
 No protein-ligand interaction detected (PLIP)- MG.113: 1 residues within 4Å:- Chain A: G.2031
 No protein-ligand interaction detected (PLIP)- MG.114: 1 residues within 4Å:- Chain A: A.845
 No protein-ligand interaction detected (PLIP)- MG.115: 2 residues within 4Å:- Chain A: U.2384, A.2388
 No protein-ligand interaction detected (PLIP)- MG.116: 2 residues within 4Å:- Chain A: A.1057, U.1058
 No protein-ligand interaction detected (PLIP)- MG.136: 3 residues within 4Å:- Chain A: U.2833, G.2848
- Ligands: SPD.312
 No protein-ligand interaction detected (PLIP)- MG.137: 1 residues within 4Å:- Chain A: A.1052
 No protein-ligand interaction detected (PLIP)- MG.144: 2 residues within 4Å:- Chain A: U.2329, G.2331
 No protein-ligand interaction detected (PLIP)- MG.172: 1 residues within 4Å:- Chain A: G.903
 No protein-ligand interaction detected (PLIP)- MG.173: 1 residues within 4Å:- Chain A: G.2013
 No protein-ligand interaction detected (PLIP)- MG.174: 4 residues within 4Å:- Chain A: C.785, U.786, G.2634, G.2635
 No protein-ligand interaction detected (PLIP)- MG.175: 4 residues within 4Å:- Chain A: G.2080, A.2081, G.2083, A.2604
 No protein-ligand interaction detected (PLIP)- MG.176: 3 residues within 4Å:- Chain A: A.2569, G.2570, G.2571
 No protein-ligand interaction detected (PLIP)- MG.294: 2 residues within 4Å:- Chain A: A.191, G.192
 No protein-ligand interaction detected (PLIP)- MG.295: 2 residues within 4Å:- Chain A: G.2364, G.2365
 No protein-ligand interaction detected (PLIP)- MG.296: 1 residues within 4Å:- Chain A: G.675
 No protein-ligand interaction detected (PLIP)- MG.297: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MG.298: 1 residues within 4Å:- Chain A: A.1285
 No protein-ligand interaction detected (PLIP)- MG.299: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MG.300: 3 residues within 4Å:- Chain A: C.2281, G.2282, G.2283
 No protein-ligand interaction detected (PLIP)- MG.301: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)- MG.302: 1 residues within 4Å:- Chain A: G.1247
 No protein-ligand interaction detected (PLIP)- MG.303: 2 residues within 4Å:- Chain A: U.872, A.2457
 No protein-ligand interaction detected (PLIP)- MG.304: 2 residues within 4Å:- Chain A: A.581, G.582
 No protein-ligand interaction detected (PLIP)- MG.305: 2 residues within 4Å:- Chain A: U.1706, U.1707
 No protein-ligand interaction detected (PLIP)- MG.306: 2 residues within 4Å:- Chain A: G.2686, A.2687
 No protein-ligand interaction detected (PLIP)- MG.307: 2 residues within 4Å:- Chain A: G.2686, G.2688
 No protein-ligand interaction detected (PLIP)- MG.309: 2 residues within 4Å:- Chain A: C.1382, C.1423
 No protein-ligand interaction detected (PLIP)- MG.310: 2 residues within 4Å:- Chain A: U.1982, C.2583
 No protein-ligand interaction detected (PLIP)- MG.327: 3 residues within 4Å:- Chain B: G.21, A.55, A.56
 No protein-ligand interaction detected (PLIP)- MG.329: 2 residues within 4Å:- Chain B: C.69, G.70
 No protein-ligand interaction detected (PLIP)- MG.331: 2 residues within 4Å:- Chain B: C.41, A.43
 No protein-ligand interaction detected (PLIP)- MG.332: 4 residues within 4Å:- Chain A: G.2850, G.2851
- Chain D: K.64, S.65
 No protein-ligand interaction detected (PLIP)- MG.333: 4 residues within 4Å:- Chain A: C.2708, C.2750
- Chain D: K.123, P.204
 No protein-ligand interaction detected (PLIP)- MG.335: 2 residues within 4Å:- Chain A: A.365
- Chain E: V.163
 No protein-ligand interaction detected (PLIP)- MG.336: 2 residues within 4Å:- Chain H: Q.3
- Chain P: Q.18
 No protein-ligand interaction detected (PLIP)- MG.337: 3 residues within 4Å:- Chain A: U.593
- Chain H: M.1, R.2
 No protein-ligand interaction detected (PLIP)- MG.338: 2 residues within 4Å:- Chain H: F.65, R.94
 No protein-ligand interaction detected (PLIP)- MG.339: 3 residues within 4Å:- Chain A: A.2387, G.2455
- Chain J: E.51
 No protein-ligand interaction detected (PLIP)- MG.343: 0 residues within 4Å:- (No contacts)
 No protein-ligand interaction detected (PLIP)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 4 x SPD: SPERMIDINE(Non-functional Binders)(Non-covalent)
- SPD.312: 5 residues within 4Å:- Chain A: C.2834, G.2845, A.2846, G.2848
- Ligands: MG.136
 No protein-ligand interaction detected (PLIP)- SPD.313: 10 residues within 4Å:- Chain A: C.1015, A.1018, A.1019, G.1020, G.1021, G.1022, A.1023, A.1025, G.1033
- Ligands: MN.161
 No protein-ligand interaction detected (PLIP)- SPD.314: 4 residues within 4Å:- Chain A: G.843, G.844, A.845
- Chain E: G.61
 No protein-ligand interaction detected (PLIP)- SPD.315: 5 residues within 4Å:- Chain A: G.2571, G.2669, G.2670, A.2671, G.2672
 No protein-ligand interaction detected (PLIP)
- 7 x EOH: ETHANOL(Non-functional Binders)
- EOH.316: 4 residues within 4Å:- Chain A: G.1975, G.1976, G.1977, U.1982
 No protein-ligand interaction detected (PLIP)- EOH.317: 3 residues within 4Å:- Chain A: G.2858, G.2859, A.2893
 No protein-ligand interaction detected (PLIP)- EOH.318: 4 residues within 4Å:- Chain A: U.344, G.355, U.357, A.359
 No protein-ligand interaction detected (PLIP)- EOH.319: 3 residues within 4Å:- Chain A: G.81, G.83
- Chain S: K.89
 1 PLIP interactions:1 interactions with chain S- Hydrophobic interactions: S:K.89
 - EOH.320: 2 residues within 4Å:- Chain A: U.867, G.990
 No protein-ligand interaction detected (PLIP)- EOH.321: 3 residues within 4Å:- Chain A: G.2764, A.2765, G.2790
 No protein-ligand interaction detected (PLIP)- EOH.322: 2 residues within 4Å:- Chain A: A.2261, G.2262
 No protein-ligand interaction detected (PLIP)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eyal, Z. et al., Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA (2015)
            
- Release Date
- 2015-10-21
- Peptides
- 50S ribosomal protein L2: C
 50S ribosomal protein L3: D
 50S ribosomal protein L4: E
 50S ribosomal protein L5: F
 50S ribosomal protein L6: G
 50S ribosomal protein L13: H
 50S ribosomal protein L14: I
 50S ribosomal protein L15: J
 50S ribosomal protein L16: K
 50S ribosomal protein L17: L
 50S ribosomal protein L18: M
 50S ribosomal protein L19: N
 50S ribosomal protein L20: O
 50S ribosomal protein L21: P
 50S ribosomal protein L22: Q
 50S ribosomal protein L23: R
 50S ribosomal protein L24: S
 50S ribosomal protein L25: T
 50S ribosomal protein L27: U
 50S ribosomal protein L28: V
 50S ribosomal protein L29: W
 50S ribosomal protein L30: X
 50S ribosomal protein L32: Y
 50S ribosomal protein L34: Z
 50S ribosomal protein L35: 0
 50S ribosomal protein L36: 1
- SMTL:PDB
- SMTL Chain Id:
 PDB Chain Id:C
 AD
 BE
 CF
 DG
 EH
 GI
 HJ
 IK
 JL
 KM
 LN
 MO
 NP
 OQ
 PR
 QS
 RT
 SU
 TV
 UW
 VX
 WY
 ZZ
 20
 31
 4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.53 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 231 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
- 91 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 4 x SPD: SPERMIDINE(Non-functional Binders)(Non-covalent)
- 7 x EOH: ETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eyal, Z. et al., Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA (2015)
            
- Release Date
- 2015-10-21
- Peptides
- 50S ribosomal protein L2: C
 50S ribosomal protein L3: D
 50S ribosomal protein L4: E
 50S ribosomal protein L5: F
 50S ribosomal protein L6: G
 50S ribosomal protein L13: H
 50S ribosomal protein L14: I
 50S ribosomal protein L15: J
 50S ribosomal protein L16: K
 50S ribosomal protein L17: L
 50S ribosomal protein L18: M
 50S ribosomal protein L19: N
 50S ribosomal protein L20: O
 50S ribosomal protein L21: P
 50S ribosomal protein L22: Q
 50S ribosomal protein L23: R
 50S ribosomal protein L24: S
 50S ribosomal protein L25: T
 50S ribosomal protein L27: U
 50S ribosomal protein L28: V
 50S ribosomal protein L29: W
 50S ribosomal protein L30: X
 50S ribosomal protein L32: Y
 50S ribosomal protein L34: Z
 50S ribosomal protein L35: 0
 50S ribosomal protein L36: 1
- SMTL:PDB
- SMTL Chain Id:
 PDB Chain Id:C
 AD
 BE
 CF
 DG
 EH
 GI
 HJ
 IK
 JL
 KM
 LN
 MO
 NP
 OQ
 PR
 QS
 RT
 SU
 TV
 UW
 VX
 WY
 ZZ
 20
 31
 4